Tauraco erythrolophus (red-crested turaco): 104372335
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Entry
104372335 CDS
T08611
Symbol
COL3A1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
teo
Tauraco erythrolophus (red-crested turaco)
Pathway
teo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
teo00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104372335 (COL3A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
teo00536
]
104372335 (COL3A1)
Glycosaminoglycan binding proteins [BR:
teo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104372335 (COL3A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
104372335
NCBI-ProteinID:
XP_009976298
LinkDB
All DBs
Position
Unknown
AA seq
1458 aa
AA seq
DB search
MMSFVQKVALLILAVFQPSIILAQQDALAGCTHLGQVYADRDVWKPEPCQICVCDSGSVL
CDDIICDDQELDCPNPEIPFGECCPVCPQTTPQPTRVIISRGPKGDPGSPGVPGRSGPPG
PPGQPGSPGAPGPPGICQSCPSINGGSFSPQYDSYDVKAGSAGIGYPQPISGFPGPPGPS
GPPGPPGHAGPPGSAGYQGSPGEPGQPGPPGPPGPVGMIGPVGPPGKDGEPGRPGRNGDR
GIPGLPGHKGHPGMPGVPGMKGQRGFDGKDGARGESGAPGPKGETGLPGANGAPGQPGPR
GPAGERGRPGNPGGPGSHGKDGSPGAAGPPGPPGPPGTAGFPGSPGFKGEAGPPGPAGSS
GSPGERGEPGPQGNAGPPGPQGPPGRAGSPGNKGEMGPSGIPGAPGLPGGRGLPGPPGTS
GSPGAKGTPGEPGKNGAKGDPGPKGERGENGTPGAPGPPGEEGKRGANGEPGQNGVPGTP
GERGSPGFRGLPGSNGLPGEKGPAGERGSPGPPGPSGPAGERGQDGGPGLPGIRGLPGIP
GSPGSDGKPGPPGSQGESGRSGPPGPPGPRGQPGVMGFPGPKGNEGAPGKNGERGPGGPP
GTPGPAGKNGDVGLPGPPGPTGASGERGEPGPSGPPGLQGLPGGPGPAGENGKPGEPGPK
GDIGGPGFPGPKGENGIPGERGAQGPPGPPGTRGGPGPAGSEGAKGPPGPPGAPGGTGLP
GLQGMPGERGASGSPGPKGDKGEPGGKGADGXXXXXXXXGNVGPIGPPGPAGPPGDKGET
GPAGAPGPVGSRGGPGERGEQGLPGPAGFPGAPGQNGEPGGKGERGPPGLRGEAGPPGAA
GPQGGPGAPGPPGPQGIKGDRGSPGGPGAAGFPGARGLPGPPGNTGSAGPPGNAGPAGKD
GPPGPPGSAGSPGSPGPAGTRGEPGSPGEKGPPGARGERGAPGEPGPQGIVGGRGNTGLP
GLRGPSGPPGTAGAKGEDGKPGTNGIPGERGAPGPQGPVGQRGLPGEPGRDGNPGSDGSP
GRDGSPGGKGDRGESGTPGPPGPPGHPGPAGTVGAPGKAGERGFQGPPGPPGSTGPAGAR
GPAGPQGPRGDKGETGERGSNGIKGHRGFPGTPGLPGPPGPLGPQGAIGSPGASGARGPP
GPAGPPGKDGTSGYPGPIGPPGPRGNRGESGPAGPPGQPGLPGPSGPPGPCCGGVAALGA
GEKGPVGYGYEYRDEPKESDINLGDIISSMKSINNQIENIISPDGSRKNPARNCRDLKFC
HPELKSGEYWIDPNQGCKMDAIKVYCNMETGETCLSANPSTVPRKNWWTSESRGRKHIWF
GESMNGGFQFSYGDPELPEDVSEVQLAFLRILSSRASQNITYHCKNSIAYMDQASGNVKK
ALKLMSSVESEIKAEGNSKFTYAVLEDGCTKHTGEWGKTVFEYRTRKTMRLPVVDIAPLD
VGGPDQEFGVDIGPVCFL
NT seq
4377 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaaaagtagctttgctcattcttgccgtgtttcaaccctcaatt
attttggcacaacaagacgcccttgcaggatgtacccatcttgggcaggtctatgctgac
agggatgtttggaaaccagagccatgccaaatctgcgtgtgtgactcaggatctgttctc
tgtgatgacatcatctgtgacgatcaggagctggactgtcccaacccagagattcccttt
ggagagtgctgtccagtttgcccgcaaacaacaccacaacctacaagagtaataatcagc
cgaggccccaaaggagaccctggttctcctggggttccaggtagaagtggtcctcctggc
cctccaggacagccagggagtcctggagcccctggcccccctgggatctgccagtcgtgt
cccagtataaacggaggtagtttttctccacagtatgactcctatgatgtgaaggccggt
tcagctggtattggttacccacagcccattagtggctttccaggaccccctggccccagt
ggtccccctggcccaccaggtcatgcaggtccccctggctctgctgggtaccaaggttcc
cctggagaaccaggacagcctggccccccgggacctccaggccctgttggaatgataggc
ccagttggtccaccaggaaaagatggagaaccaggaagaccaggcagaaatggagatcgt
ggaatccctggattaccgggtcacaaaggacaccctggaatgcctggagtgcctgggatg
aaaggtcaacgaggttttgatggaaaagatggtgccagaggtgagagtggtgctcctggt
ccaaagggtgaaactggtcttcctggagcaaatggagcaccgggccaaccgggaccaaga
ggtccagctggcgaaagaggaagaccagggaatcccggtggccctggttcccatggcaag
gatggatctccaggagccgcaggcccacctggtcccccaggtcctcctggcactgcagga
tttccaggctctccaggtttcaagggtgaagctggtcctcctggtcctgctggttctagt
ggtagtcctggagagagaggagaacctggtcctcagggtaatgctgggccacccgggcct
cagggccctcctggaagagctggaagccctggcaacaagggtgaaatgggaccttctggt
attcccggtgctcctggtctgccaggaggccgtggtcttcctggtcctccaggtacaagt
ggaagccctggagcaaaaggcactccaggagaacctggtaagaatggtgcaaaaggagat
ccgggcccaaaaggcgagcgtggtgaaaatggcaccccaggtgctcctggacctcctggt
gaggaaggcaaacgaggtgcaaatggtgaacccggccagaatggcgtacctggtacacct
ggagaaaggggctcccctggtttccgtggcttacctggtagcaatggacttccaggtgaa
aagggtcctgcaggtgaacgtggtagcccaggtcctcctggccccagtggacccgcagga
gagcgtggacaagatggaggcccaggtcttcctggaataagaggtttgcctggaattcca
ggaagccctggaagcgatgggaagcctggccctccaggtagtcagggtgaatctggtcgc
tctggtccacctggtcccccaggcccacgtggacaaccaggtgtaatgggtttccctggt
cctaagggcaatgagggtgcaccaggtaagaacggagaaagaggccctggtggaccacct
ggaacacctggtcctgctgggaagaatggtgatgttggtctcccaggtcctcctggacct
actggtgcttctggggagagaggagaaccaggaccatcaggtccacctggcctccaggga
ttgcctggtgggccaggaccagctggagagaatggaaagcctggagaaccagggccaaaa
ggtgatattggaggacctggattcccaggccctaagggtgaaaatggtatcccaggtgaa
cgtggtgcacagggtcctccaggacctcctggaacaagaggtgggccaggtcctgctggc
tcagaaggtgccaagggtcctcctggaccccctggtgcccctggaggcacagggctgcct
ggcttacagggaatgccaggagaaagaggagcttctggaagtcctggaccaaaaggggat
aagggagaacctggtggcaaaggtgctgatggcatnnnnnnnnnnnnnnnnnnnnagggt
aatgtaggtcccatcggtcctcctggtcctgctggcccacctggagataagggagagact
ggtccagcaggtgccccaggcccagtgggttcccgtggtggtcctggtgaacgaggagaa
caaggtcttcctggacctgctggtttccctggagctccaggccaaaatggggaacctggt
gggaaaggagaaagaggcccacctggtctaagaggagaggctggaccccctggagctgca
ggtccacaaggtggtcctggtgcaccaggtccacctggtccccaaggaataaaaggagat
cgtggatctcctggaggccctggtgctgctggtttccctggtgctcgtggtctgcctggt
ccccctggtaacactggtagtgcaggtccccctggtaatgcagggcctgcaggcaaggat
gggcctcccggaccccctggtagcgctggttctcctggcagcccaggacctgctggaaca
agaggtgagcctggctcaccaggtgaaaaagggccaccaggcgcacgaggagaaaggggg
gcaccaggagaaccaggtcctcagggcattgttggtggccggggcaacacgggtttgcca
ggtctgcgtggcccgagcggccctcccggtacggcgggtgccaagggtgaagacggtaaa
ccaggcaccaatggtatcccaggagaacgtggtgctcctggtccacaaggtcctgttgga
caaagaggcttacctggagagcctggcagagatggtaaccctggctcagatggctcacct
ggacgtgatggatccccaggaggcaaaggtgaccgtggtgaaagcggcactcctggccct
ccgggacctcctggtcaccctggacctgcaggtaccgttggtgcacctggaaaagctggg
gaaagaggatttcagggtccacccggccctcctggctctactggtcctgctggtgctcga
ggtccagctggtcctcaaggtcctcgtggtgataaaggtgaaactggtgaaagaggcagc
aatggcataaagggtcatagaggatttcctggtacccctggtctccctggtcctcccggt
cctctgggtccacaaggtgcaattggaagtccaggagcttcaggtgcaaggggtccccca
ggaccagctgggccacctggaaaagatggtacaagtggctatccaggtccaattggtcct
cccggccctcgtggtaacagaggtgaaagtggccctgcaggtccaccaggccagcctggt
cttcctggtccttctggtcctcctggtccatgttgtggtggtgtggctgccctgggtgct
ggtgaaaaaggtccagtgggctatgggtatgaatatcgagatgagccaaaagaaagtgat
atcaatctgggtgacatcatatcttcaatgaaatcaattaacaaccagattgaaaacatt
attagtcctgatggatcacggaagaatccagctcgtaactgcagagatctgaaattctgc
catcctgagctcaagagtggggagtactggattgatcctaaccagggctgcaagatggat
gctattaaagtatactgtaatatggaaactggtgagacatgcctcagtgctaaccccagc
accgtgccgaggaagaactggtggaccagcgaaagcagaggaaggaaacacatttggttt
ggagaatctatgaatggaggcttccagttcagctatggagatcctgagcttccagaggat
gtctcagaagttcagctggccttcctccgcatcctctccagccgtgcctcccagaacatc
acctaccactgcaagaacagcattgcctacatggatcaagccagtggaaatgttaaaaaa
gctctgaaactgatgagctctgttgaaagtgagatcaaggctgaaggaaacagcaaattc
acatatgctgttctggaagatggctgtactaaacacactggtgaatggggtaaaacagtc
tttgaatacagaacacgcaagacaatgagattgcctgtggttgatattgcacccttagat
gttggtggtcctgatcaggaatttggtgtggacatcggcccggtctgcttcttataa
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integrated database retrieval system
