Tauraco erythrolophus (red-crested turaco): 104376683
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Entry
104376683 CDS
T08611
Symbol
UPF1
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
teo
Tauraco erythrolophus (red-crested turaco)
Pathway
teo03013
Nucleocytoplasmic transport
teo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
teo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104376683 (UPF1)
03015 mRNA surveillance pathway
104376683 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
teo03019
]
104376683 (UPF1)
Enzymes [BR:
teo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104376683 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104376683 (UPF1)
Messenger RNA biogenesis [BR:
teo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104376683 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104376683 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104376683
NCBI-ProteinID:
XP_009981600
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
VNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVY
CNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGF
IPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQ
ITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADY
DKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKG
IGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETS
VSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGT
GKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPV
SFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT
CVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
KAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFD
FQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPY
EGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDP
RRLNVALTRARYGVIIVGNPKAXXXXXXXXXLNYYKEQKVLVEGPLNNLRESLMQFSKPR
KLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVT
AMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRGGRQKNRFGIPGTSQSNLPN
SQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
gttaatgggcccgatggcattctacagaacggagctgtggatgacaatgtggctaaaacc
agccagcttctggcagagttgaattttgaagaagatgaagaagatacctattacacaaag
gatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtggtttac
tgtaacaccagcaaaaagtggttctgtaacgggcgtggaaatacatctggcagccacatc
gttaatcatcttgtgagagcgaagtgcaaagaggtgactctccataaagatggacctcta
ggagagactgtcttggagtgttacaactgtggatgtcgtaatgtgtttctccttggcttt
attccagctaaggcagactccgtggttgttttgctgtgcaggcagccatgtgccagtcag
agcagtttaaaggatattaattgggacagttcgcagtggcagcctcttatccaagatcgc
tgtttcctttcatggctggtaaagattccatctgaacaggaacagttgagagcacgtcag
atcacagctcaacagattaacaaactggaagaactttggaaggaaaatccatctgcgacc
cttgaggacttagaaaagcctggtgtcgatgaagagccacagcatgtcctgcttagatat
gaagatgcttatcaataccaaaatatatttggtcctctagtcaagctcgaggcagactat
gacaagaaactcaaggagtctcagacccaagataacatcacagtcagatgggacctgggc
ttgaacaagaaaagaattgcttatttcactctgccaaagactgattcagatatgcgtctt
atgcaaggagatgagatctgcttgaggtataaaggagacttggcccctttatggaaagga
attggtcatgttatcaaagttcctgataattatggtgatgagatagccattgagctgagg
agcagcgttggagcgcctgtggaagttactcataacttccaagtggattttgtgtggaaa
tctacttcgtttgacagaatgcagagtgctttaaaaacattcgctgtggatgagacttcc
gtgtctgggtacatctatcacaaactgttaggtcatgaggtagaagatgtaattattaaa
tgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccctggtact
ggaaaaacagtgacatcagccacaattgtctatcatctggctagacagggcaatgggcct
gtgttggtctgtgctccgagtaatatagctgttgaccagttgactgagaagatccatcaa
actggcctgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactctcctgtt
tccttcttggcattgcacaaccagatcagaaacatggatagcatgccagagcttcaaaaa
ctgcagcagcttaaagatgaaactggagaactgtcatctgctgatgagaaacgttaccgt
gcgctgaaacgaacagcagagcgtgaattgcttatgaatgcagatgtgatctgttgcacg
tgtgtgggagctggtgatccaagacttgcaaaaatgcagttccgctccattctgatcgat
gagagcacacaggctactgagccagagtgcatggtgccagtcgtcctgggagcaaaacag
cttattcttgtgggtgaccactgccagctgggtcctgtggtgatgtgtaagaaagctgcc
aaggctggcctgtcccagtctctcttcgagaggctcgtggtgctggggattcgtccgatc
cgcctgcaagtgcagtatcgcatgcatcccgcgctcagtgcgttcccgtccaatatcttc
tacgagggttcgctccagaatggcgtgactgcagcggaccgtgtgaaaaaagggtttgat
ttccagtggccacagccagataagccgatgtttttctatgttacacaaggacaggaggaa
atcgccagctcaggcacctcttacttaaacaggacggaagctgccaatgtggagaagata
actacaaagctgttgaaagctggtgccaaaccagatcagattggcatcattactccttac
gaaggtcaacggtcctatctggtgcagtacatgcagttcagtggttccttgcacacaaag
ctctaccaggaagtggaaattgcaagcgtggacgccttccagggacgagagaaggacttt
attatcctttcttgtgtgagggccaatgaacaccaaggaatagggtttctgaatgacccc
aggcgtcttaatgtagctcttacaagagcaaggtatggagtaatcatagttgggaaccca
aaagcanncnnnnnnnnnnnnnnnnnnnnnnnnctgaactactacaaggagcagaaggtc
ctggtggaggggccgctgaacaacctccgggaaagccttatgcagttcagcaagccccgg
aaactcgtcaataccatcaacccaggtgcccgtttcatgactactgccatgtatgacgca
cgcgaggctattattccaggatctgtctatgaccggagcagtcaagggcgcccatccaac
atgtacttccaaacccacgaccagatcgggatgattagtgctggccccagccacgtcact
gccatgaacattcctatccctttcaacctcgtgatgccaccgatgccaccgccgggatac
tttggccaggctaacggacccgccgcaggacgtggggcgccaaaaggaaagactggtcgt
ggtgggcgccagaaaaatcgttttgggattcctggaactagtcagtcaaaccttccgaat
agtcaagcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcagggg
tacatctccatgagtcagccatcacagatgagtcagcctgggctctcccaaccagaatta
tcacaggacagttaccttggtgatgagtttaaatctcagatcgacgtggcgctgtcacag
gactctacttaccagggtgaacgtgcgtatcaacacggcggagtgacgggactgtcacag
tactag
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integrated database retrieval system
