Tauraco erythrolophus (red-crested turaco): 104377830
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Entry
104377830 CDS
T08611
Symbol
XRN2
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
teo
Tauraco erythrolophus (red-crested turaco)
Pathway
teo03008
Ribosome biogenesis in eukaryotes
teo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
teo00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
104377830 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
104377830 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
teo03021
]
104377830 (XRN2)
03019 Messenger RNA biogenesis [BR:
teo03019
]
104377830 (XRN2)
03009 Ribosome biogenesis [BR:
teo03009
]
104377830 (XRN2)
03016 Transfer RNA biogenesis [BR:
teo03016
]
104377830 (XRN2)
Transcription machinery [BR:
teo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104377830 (XRN2)
Messenger RNA biogenesis [BR:
teo03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
104377830 (XRN2)
Ribosome biogenesis [BR:
teo03009
]
Eukaryotic type
Pre-60S particles
RNases
104377830 (XRN2)
Transfer RNA biogenesis [BR:
teo03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
104377830 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
104377830
NCBI-ProteinID:
XP_009983004
LinkDB
All DBs
Position
Unknown
AA seq
1013 aa
AA seq
DB search
MNAYSGVSWWQLAVVVLVALPNSCVTDGICSEDLGSPQLRGLSGTLCHDRVCQGQVGAEE
RVIKGANSGPDVICHDLTSLGEQSKIDAKECNGIKAPIDTSKPNPNEVEFDNLYLDMNGI
IHPCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRR
FRASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYI
ADRLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIM
LGLATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPVAE
QEFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREG
AIDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQ
KEKRKRMKRDQPSFIPGGQFSPQALGSRSSPQAISNPRQAAFEMRMHDRQNSTTSSSPNT
SLTSDGSPSLAGGIKRKAEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKV
VQSYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQL
MGVFPAASGNFLPPSWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRL
RAALEEVYPDLTPEESRRNSLGGDVLFVGKHHPLCDFIVEQYKTKNTEPVDMPPELCHGI
QGKLTLNENAVLPDQTVESPVPMLRDLAQNSAVSISFKDPQFDEDFVFKAIVLPGAKKPA
PVLKPGDWEKTNNDGRPWRPQLGFNRDRKPVHLDQSAFRTLGXDCQHWMPGMYANAVPLG
TYGSPYARPLLSGQQQIPKLLSNLRPQESWRGPTPLFQQAPQRTAGAAPLLAWNRMLQSQ
NQYPPGQYQGLGGPMSYPQRPEDRMDRGRQRGFPRKGKEAPLPLPTKKTSIWS
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcttactctggagtgagctggtggcagctagcagtggtcgttctggtcgctttg
ccaaactcttgtgtcactgatgggatctgttccgaggatctgggtagccctcagcttaga
gggctctcagggacgctgtgtcacgatcgcgtctgccaagggcaagtgggtgctgaggaa
agggtgataaagggagcaaacagtggtccagatgtcatctgccatgatttgactagtttg
ggtgaacagtccaagatagatgctaaagagtgcaatggcatcaaggctccgatcgacaca
agcaagccaaaccccaacgaggtggagttcgacaacctctatttggacatgaatggtatc
attcacccttgcacgcatccagaagacaagccagcgcccaaaaatgaagatgaaatgatg
gttgcgatttttgagtacattgacaggatcttcaacattgtaagaccaaggcgactcctt
tacatggccatagatggagtagctccacgtgccaaaatgaatcaacagcggtcaagaaga
ttcagagcatcaaaggagggcatggaagctgctgaagagaagcaaaaaatacgacaagaa
attctggcaaaaggtggcattcttcctccagaagaagtgaaagagagatttgacagcaat
tgtattaccccgggaactgagtttatggacaatcttgctaaatgtctccgttattacatt
gctgaccgtttgaacagcgacccagggtggaaaaatttgacagttattttgtccgatgct
agtgctcctggggaaggtgaacataaaatcatggattacattagaagacaaagagctcaa
ccaaaccatgacccaaacactcatcattgtctgtgtggggctgacgctgatctgattatg
cttgggctagctacacacgaaccaaacttcactataattagggaagagtttaaaccaaat
aaacccaagccatgtgctctttgtaaccagatgggtcatgaggttaaggattgccaaggt
ttgcccagagaaaaacaaggcaagcacgatcagtttgcagacagtcttcctgttgctgaa
caagagtttatcttcatccgattatgtgttttgcgagagtatttggaaagggaactcact
atggccagtttgcctttcacgtttgattttgaaagaagtgttgatgactgggtctttatg
tgcttctttgtgggaaatgacttccttcctcatctgccatctttggagatcagggaggga
gcaattgatcgcttggttaacatatacaaaaacgttgtgcacaaaactggggggtacctc
acagaaagtgggtttgtcaacctacagcgagtccagatgatcatgttagcggttggagaa
gttgaagatagtattttcaaaaagagaaaagatgacgatgataactttaaaagacggcaa
aaagaaaaaagaaaaagaatgaagagggatcagccttcctttattcctggtggacagttt
tctcctcaagctctgggaagtcgatctagccctcaggcaatcagtaaccctagacaagct
gcctttgagatgaggatgcacgaccgccagaactctacaacttcatcatctccaaatacc
agcctcacttctgatggcagcccatccctggcaggaggaattaagcgaaaagctgaagat
agtgacagtgaacctgagccagaggataatatcaggttgtgggaaactggttggaagcaa
cggtactataaaaacaaatttgatgttgatgcatctgatgagaaattccgtcgtaaagtt
gtacagtcctatgtggaagggctttgctgggtgctcagatactattatcagggctgcgcg
tcctggaactggtattacccttttcactacgctccgtttgcttctgactttgagggcatt
gcagacatgccttcagattttgagaaaggctcgaaaccgttcaagcctctcgaacaactt
atgggagtgtttccagccgcgagtggaaatttcctgccaccatcgtggaggaagctgatg
acagatccggaatcaagtataattgacttctacccagaagattttgccattgatttgaat
gggaagaaatatgcttggcaaggtgttgcattattgccatttgttgatgagcgacgtctt
cgagctgccctagaagaagtctaccctgacctcactcctgaagaaagcagaagaaacagc
cttggtggtgatgttctctttgttggaaaacaccatccactttgtgactttattgtagag
cagtacaagaccaaaaatacagagccagtggatatgcccccagagctgtgccatggaatc
cagggaaagcttacactgaatgaaaatgctgtccttccagatcagacggtggagtctcct
gttccaatgctgcgtgatcttgcacaaaactctgcagtcagtatctctttcaaagatcca
caattcgatgaagactttgttttcaaggcaatagtgttacctggtgcaaagaaacctgct
ccagttctgaaaccgggagactgggaaaaaaccaacaatgacggcaggccttggagacca
cagcttggttttaaccgagacagaaaaccagtgcatttggaccagtcagcattcagaacc
ttagggtaagactgtcagcactggatgccaggaatgtatgccaacgcggtacctcttgga
acttacgggagcccctacgccagaccgcttctgagtgggcagcagcagattcctaaattg
ttgtcaaatctcagaccccaggagtcttggcgaggtcctacgcccttgtttcagcaggca
ccgcagagaaccgctggggctgctcctctccttgcctggaaccgcatgctgcaatcccaa
aaccagtacccgccgggtcagtaccaggggctgggcggcccgatgagttacccgcagaga
cccgaggatcggatggacaggggaagacagcgaggcttccctcgcaaaggaaaggaagcc
cctctgcccctccccaccaaaaaaacctctatatggagttaa
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