Tauraco erythrolophus (red-crested turaco): 104378245
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Entry
104378245 CDS
T08611
Symbol
RTCB
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
teo
Tauraco erythrolophus (red-crested turaco)
Brite
KEGG Orthology (KO) [BR:
teo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
teo03016
]
104378245 (RTCB)
Enzymes [BR:
teo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
104378245 (RTCB)
Transfer RNA biogenesis [BR:
teo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
104378245 (RTCB)
Prokaryotic type
tRNA splicing ligases
104378245 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
104378245
NCBI-ProteinID:
XP_009983495
LinkDB
All DBs
Position
Unknown
AA seq
477 aa
AA seq
DB search
SPQVEGVFYVNDPLEKLMFEELRNACRGGGAGGFLPAMKQIGNVAALPGIVHRSIGLPDV
HSGYGFAIGNMAAFDMNDPEAVVSPGGVGFDINCGVRLLRTNLDESDVQPVKEQLAQAMF
DHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNKVS
SRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLGHQ
VATDALVAMEKAMKRDKIIVNDRQLACARIASAEGQDYLKGMAXXXXXXXXXXSSMTFLT
RQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLVHRKGSTRAFPPHHPLI
AVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTCHGAGRALSRAKSRRNLDFQDV
LDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
tccccgcaggtggaaggcgttttctacgtgaacgaccccctggagaagctgatgtttgag
gagctgcgcaacgcctgccgaggcggaggtgcaggtggctttttgcctgctatgaaacag
attgggaatgtggctgcattacctggcattgttcatagatcaataggccttccagatgtc
cattctggctatgggtttgccattggcaacatggctgcctttgatatgaatgatcctgaa
gcagtggtttcaccaggtggtgtcggattcgacatcaactgtggtgtccgcttactgcgt
acaaatttggatgaaagtgatgtgcagcctgtgaaggagcagctcgcccaggctatgttt
gaccacattcctgttggtgtcggctccaaaggtgtcatccccatgaatgccaaggatttg
gaagaggcactagagatgggtgtggactggtctctccgggaaggctatgcctgggcagag
gacaaggagcactgtgaggagtatggaagaatgctgcaggctgaccccaacaaggtctcc
tcaagagcaaagaagagaggcctgcctcagctggggaccctgggagccggaaatcattac
gccgagatccaggttgtggatgacatttacaatgaatatgctgccaggaagatgggtatc
gaccacaaagggcaggtgtgcgtgatgatccacagcggcagcagaggcctgggccaccag
gttgccacagatgcattggtggcgatggaaaaagctatgaaacgggacaaaatcatagtg
aatgatcgccagctggcatgtgccaggattgcctctgcagagggacaggattacttgaag
ggaatggcannnnnnnnnnnnnnnnnnnnnnnnnnnngctcttctatgacttttctaaca
agacaggcctttgccaaagtcttcaacacaaccccagatgaccttgacatgcatgttatc
tatgatgtgtctcacaacattgccaaagtggagcaacatgtcgtggatggaaaggagcgg
actctgctggtgcacagaaagggctcaaccagagcgttccctccccaccatcctcttatc
gctgttgattatcaactgactggacagcctgttttgatcggtgggactatgggcacctgt
agctatgttcttactggcacagagcaaggcatgactgagaccttcggaactacttgccat
ggagctggtcgtgcactgtctcgagccaaatctcgacgtaacttggacttccaggatgta
ttggacaagctggctgacatgggcattgccatccgtgttgcttctcccaaactggtcatg
gaagaagcaccagagtcttacaagaacgtgacagatgtggttaacacctgccatgcagct
ggcatcagcaagaaagccattaaactgagacctattgctgttataaaaggctag
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