Tepidanaerobacter acetatoxydans Re1: TepRe1_0167
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Entry
TepRe1_0167 CDS
T01495
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tep
Tepidanaerobacter acetatoxydans Re1
Pathway
tep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TepRe1_0167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tep03400
]
TepRe1_0167
Enzymes [BR:
tep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TepRe1_0167
DNA repair and recombination proteins [BR:
tep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TepRe1_0167
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Glyco_hydro_115
INTS4_8HBD
Motif
Other DBs
NCBI-ProteinID:
AEE90376
UniProt:
F4LSR3
LinkDB
All DBs
Position
186131..189667
Genome browser
AA seq
1178 aa
AA seq
DB search
MKQLLKTTEEIAEFQKLVKDLSRGMSHLFAYGVSDSQRAYLIAALKNRAVPQILVVTADS
LEAKKLAEDLLFFLSADEVAVFPASSVLPYETAARSPEFTAKRLKVMENLLMKKPMVVVA
PIQALLTKVVAPDIVKKFTLELKVGDIIAMDDIVSKLSAMGYERVEMIEAQGQFAVRGGI
LDIYPLTQEYPYRLEFFDDEIDSIREFLTEDQRSIDKLDKIFVGPAREVVYDEDTAKSAA
IAIAEELKQRRNLLNSLGHPELAEHLAEKVEEHIGKLSNGLFFESAELYISHLYPRLCTI
LDYFENRLISVLVEPGRILEAQKNAAFEVQETYKGLLERGEILASQANIYCSPFEILERL
KQQRTVYFSMLPKIHPEFESRKLYSFQFQSIPSFYGKLDLAVEEILRLKRRNYRIVLLSG
TAERAKYLSKSLREKDIEVSIYSDEDGPLQPGQVVVMPGSLEHGFDNPNIRLAIFSDSEI
YGRPKKRQTKARPKAKGKRITDFNELDVGDYVVHITHGIGKYLGIESLEVGGHIKDYFTL
MYAGGDKLYVPTNQVDLIQKYVGADDTPPKLHKLGGNEWNKAKSKAKDSIKQMAEELIKL
YATRESVSGFAFSADSPWQKEFQDMFPYEETPDQLAAIEEVKRDMESPKPMDRLLCGDVG
YGKTEVAMRAAFKAVMDGKQVAVLVPTTILAEQHFHTFAERFKPFPVKIESISRFKSPTE
QKHILTKLKTGEIDIIIGTHRLLQKDIKFKDLGLLVVDEEQRFGVSHKEKIKQLKKNVDV
LTLTATPIPRTLHMAMSGLRDMSIIETPPEDRFPIQTYVVEHNESLIRDAIMRELSRNGQ
VYYVYNRVQTIHEEAQKLKRLVPEARIAVAHGQMNEDELEEVMLGFYEHDYDVLVCTTII
ESGLDIPNVNTLIVTSADRLGLSQLYQLRGRVGRSNRQAFAYLTYKKDKVLSEAAEKRLS
AIREFTEFGSGFKIALKDLEIRGAGNILGAEQHGHMMAIGYDLYTKLLAAAVKELKGEKE
EEEIRPVLELDVNAYISDKYISKPALKMEIYQRIASVDTMEEVDDLEEEVEDRFGDIPEP
TRNLIVISRIRVLAAKLRIASIIQQGDIINIKFHDSNKLTPEMLLRIKTVMGSQVNIIGT
KIPTIAVKTRSSGGIKLLLRLQKILEELKAMQEVCSVV
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagcttttaaaaaccaccgaggagatagcggaatttcaaaaattggtaaaagac
ttaagccgcggtatgtcgcatttatttgcttatggtgtgtcagactctcagcgggcctat
cttatagctgcattaaagaacagggcagtcccgcagatattagtagttactgccgactcg
ctggaagcaaagaaacttgcggaagacctcttgttttttttaagtgccgatgaggttgct
gtttttccggcaagttctgttttgccatatgaaacggctgcacgaagtccggagtttacg
gcaaaacggttgaaggtaatggaaaatttattgatgaaaaaacccatggtagtggttgct
cctattcaagcgctgcttacaaaagtggtggcaccggatattgtgaaaaaattcacttta
gagctcaaagttggggatataattgctatggatgatattgtatctaagctatcggccatg
ggatacgaacgcgtggaaatgattgaggctcaaggccaatttgccgttcgaggcggaatt
cttgacatttatccgctcactcaagaatatccctaccgcttagaattttttgatgatgaa
attgattctatacgagagttccttacggaagatcagcgatcgattgataaactcgacaaa
atatttgtaggccctgcaagagaagtagtttatgatgaggatacggcaaaatcggctgca
atagccatagcagaagaattaaagcagcggcggaatttgttaaattctctgggacatccg
gagcttgccgaacatcttgcggaaaaagttgaggaacatattgggaaactgtccaatgga
cttttttttgagtctgcagaactgtatatatcacatttatatcctcggctttgtacgatt
ttagattactttgaaaatcggcttatatcagtattggtagaaccgggcagaattttggaa
gcccagaaaaatgctgccttcgaagtgcaggaaacttacaaaggactcttggaaagaggc
gaaattctggcatcccaggccaacatttactgtagtccttttgagatactggaaagatta
aaacagcaaagaacggtttatttttctatgttgcctaagatacatccagagtttgaatct
cgtaagttatattcttttcagttccaatcaattccttctttttacggaaaattggattta
gcagtcgaagaaatcttaaggctaaagcgtagaaattacagaatagtgctgctttccggc
actgcagagagagcgaagtatttgtctaaaagcctgagagaaaaagatattgaagttagc
atatacagcgatgaagacggacctttacagccaggtcaagtagtagtaatgccgggttca
ttagagcatggttttgacaatcctaatataagactggctattttttcggattcggagata
tatgggaggccaaaaaagcggcaaaccaaggcaaggcctaaagcaaagggtaaacggatc
acagattttaatgagcttgatgtgggagactatgttgttcatataacccatggcattggg
aaatatcttggtattgaatcgctggaagtaggggggcatataaaggattattttacatta
atgtatgccggaggagataaactctatgttcctacaaaccaggtggatttaatacaaaaa
tatgtaggtgcggatgatacacctccaaaacttcataaactgggcggtaatgagtggaat
aaggccaaaagcaaagctaaagattcaataaaacaaatggcagaggaattgataaaatta
tatgcaacaagggagtctgtgagcggttttgcattttcagccgattctccatggcagaag
gagtttcaggacatgtttccatatgaagaaactcctgaccaactggccgccattgaagaa
gtaaagcgtgatatggaaagcccaaaacctatggaccggctgctttgcggagatgtggga
tatggcaagaccgaggttgctatgagggcggcttttaaagcagtaatggacggtaaacaa
gtagcagtgctggttcctactactattttggccgaacagcattttcatacatttgctgag
cgattcaaaccctttcctgtaaaaatagaatctatcagccgattcaaatcgccgactgag
caaaaacatattttaacgaaactgaaaaccggagaaatcgacataattatcgggactcac
aggttattgcaaaaagatataaaattcaaggatttgggtcttctggtagtggatgaagag
cagcggtttggggtatctcacaaagaaaaaataaaacaactcaagaaaaatgttgatgtg
ctcacgcttacggctacccctatacccagaacattgcatatggccatgagtggcttaagg
gatatgagtataatagaaactccgccggaagacagatttccaattcaaacatatgtggta
gaacataatgaatcacttatcagagatgcaataatgcgtgaactttcccgcaatgggcaa
gtctactatgtttacaacagggtgcagaccattcacgaagaggcacaaaagcttaaacgg
cttgtgcccgaagctcgtattgcagtagctcacggtcagatgaatgaggatgaattagaa
gaagtaatgctgggattttatgagcatgattatgatgttttggtatgcaccactattata
gagagcgggcttgatatacccaatgtaaataccttaattgtcacttcggcagacagactg
gggctttcgcagctgtatcaattgcgcggcagggtgggcaggtctaatcggcaagcattt
gcctatttgacttataaaaaagataaggtattaagcgaggcggcggaaaaacggctttcg
gcaattcgtgagtttacggaattcggatccgggtttaaaatagctttaaaggatttggaa
atccgcggagccggcaatattcttggagccgagcaacatggtcacatgatggcaatagga
tatgatctttacaccaaactgttggcagcagcggtgaaggaactaaaaggtgagaaggaa
gaagaggaaataaggcctgtgttggaacttgatgtcaatgcatatatttccgataagtat
ataagcaaaccggccttaaagatggaaatttaccagcgaattgcatcggtagataccatg
gaagaagtagatgatttggaggaagaagtggaagacaggtttggggacattccagaacct
acaagaaatttaattgtgatatcgcgtattagagttttggcggctaagctcaggatagcc
agcattatacaacaaggcgatattattaacataaaatttcacgatagtaacaaattgacg
cccgagatgctgctgcgaataaaaacagtgatgggtagccaggtaaatatcataggaaca
aagattcccacaattgcggtcaaaaccagaagcagtggagggataaaacttttactgcgt
ctacagaagattttggaagagttaaaggctatgcaggaagtatgcagtgtagtataa
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