Tepidanaerobacter acetatoxydans Re1: TepRe1_0277
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Entry
TepRe1_0277 CDS
T01495
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tep
Tepidanaerobacter acetatoxydans Re1
Pathway
tep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TepRe1_0277
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tep03019
]
TepRe1_0277
03009 Ribosome biogenesis [BR:
tep03009
]
TepRe1_0277
Enzymes [BR:
tep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TepRe1_0277
Messenger RNA biogenesis [BR:
tep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TepRe1_0277
Ribosome biogenesis [BR:
tep03009
]
Prokaryotic type
rRNA helicases
TepRe1_0277
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
AAA_19
Helicase_RecD
SMC_N
AAA_30
UvrA_inter
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AEE90480
UniProt:
F4LTE9
LinkDB
All DBs
Position
292559..294148
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AA seq
529 aa
AA seq
DB search
MSQMKFEELNLSKELLRAINDMGFEEATPIQSQAIPYIYEGRDVIGQAQTGTGKTAAFGL
PILDMIDTDDKNQQAIILCPTRELAIQVAEELKALSKYKEGMKILPVYGGQPIERQIHAL
KRGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEMLDMGFREDIEKILEDTPKARQ
TLMFSATIPKPILELAERYLNNPQLIKVVHKELTVPSVEQYYFEVKERDKVEALSRLIDF
YNPNLALVFCNTKKRVDELMEQLQARGYSADGLHGDMSQSQRDRVMTKFKNGTIDILVAT
DVAARGLDVDDVDVVVNFDVPQNDEYYVHRIGRTGRAGRSGKAFTFVIGRDIYKLKDIQR
YANTKILRREIPSLLDVEETRINLLLEKVKQVVDDGGLGKYNQWIERLMEEEYTSLDLAA
ALLKIVLGKDGEQEQPESSELDIESTGGDSGMARLFINIGRNQKIRAKDIVGAIAGETGM
PGKLIGSIDIYDKFTFVEVPAEYAVDVLNTMKNNQIKGKKINIEPANKK
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaatgaaatttgaagaactaaatttatccaaggaactgctcagagccataaat
gatatgggttttgaggaagccacaccaattcagtcccaagcaattccctatatttacgaa
ggaagagatgtcataggccaagctcagaccggcacaggtaaaactgcagctttcgggttg
ccgatattggatatgatagacactgatgacaaaaatcagcaggcgattatcctttgtcca
accagggaactggccattcaggtggccgaagagctaaaagccctttctaaatataaagaa
ggaatgaagattttgcctgtttatggtggtcagccaatagaaaggcaaatccacgcttta
aaaaggggtgttcagattatcataggaacccccggcagagttatggaccatatgagaagg
catacgctgaaactgcaaaatacaaagatagtagttttggatgaagcggatgaaatgctg
gacatgggttttagggaagatattgaaaaaattctggaagataccccaaaggcaagacaa
actttaatgttttccgcaactatacctaaacctattttagaacttgccgaaagatacctg
aataatccccaacttataaaagtagtgcataaagagcttacggttcccagcgttgaacag
tactactttgaggttaaggaaagagataaggttgaagccttatcacgcctaattgacttt
tataatccgaatttagctctagtgttttgcaacaccaagaaacgtgttgatgagctgatg
gagcagctgcaggccagaggatattctgctgacggattacacggcgacatgtcacagtct
caacgggacagggttatgaccaaattcaaaaatggtacaatcgatatcctggtagctaca
gatgttgcagccagagggctggatgtagatgatgtagatgttgtagttaactttgatgtg
ccgcaaaacgatgaatactatgtgcatagaataggccggacaggccgagcaggaaggtcc
gggaaagcttttacctttgtaataggaagagatatttacaaattaaaggatatacaaaga
tatgccaataccaagatacttcgccgagagataccgtcgcttcttgatgtagaagaaact
cgaataaatctgcttcttgagaaagtaaagcaggtagtggacgatggaggccttggcaag
tataatcaatggattgaaaggcttatggaggaggaatatacatccttggatctcgctgct
gccttgctaaaaatagtacttggcaaggacggtgaacaagaacagcctgagagctcagaa
ttggatatagaaagcaccggaggagattcggggatggctagactctttataaatatcggt
agaaatcaaaagataagagcaaaggatatagtgggggccattgccggagaaaccggtatg
ccgggaaaactcataggcagtattgatatctatgataaatttacctttgttgaggtacct
gcagaatatgcagtagatgtcctcaatactatgaagaataatcaaattaagggtaaaaaa
ataaatatagaaccagctaataagaaataa
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