Tepidanaerobacter acetatoxydans Re1: TepRe1_1018
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Entry
TepRe1_1018 CDS
T01495
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tep
Tepidanaerobacter acetatoxydans Re1
Pathway
tep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TepRe1_1018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tep03019
]
TepRe1_1018
03016 Transfer RNA biogenesis [BR:
tep03016
]
TepRe1_1018
Enzymes [BR:
tep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TepRe1_1018
Messenger RNA biogenesis [BR:
tep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TepRe1_1018
Transfer RNA biogenesis [BR:
tep03016
]
Prokaryotic type
tRNA degradation factors
TepRe1_1018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
Rho_RNA_bind
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AEE91166
UniProt:
F4LRU8
LinkDB
All DBs
Position
1081539..1083653
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AA seq
704 aa
AA seq
DB search
MPLNEQLLDFMKEKAYKPMTEGELISALNIDKSEIDLLIKTLDYMEKTGMVVKNRRGRYG
VPEKMNLIAGQLECHPGGFAFLVPNNTEQEDIYISREDMNGAMHGDLVLVRPKIPADRTL
KTQGEVIRILKRANKKIVGTVERGKQFSFVIPDDKRLFYDVFIPKEKAKGAKTGHKVVAQ
ITEWPGKYRNPAGEIVEILGHQDEPGIDVLSIIKKYDLPLEFPPKVMKQLEQIPDEVREQ
DLRGRKDFRNLKTVTIDGEDAKDLDDAVSIEKTNDGYRLGVHIADVSYYVKEKSPLDAEA
LKRGCSVYLVDRVIPMLPPKLSNGICSLNPQVDRLTMSVIIDFDENADVKSYKITPGVIK
TCERMTYTQVNKILEEKDPEVMKRFDYLIDDLILMKQLAEKLTQKRFARGSLDFDLDETK
VILDDQGRPIDVVKEERRISNRIIEEFMIAANEIVAEHMFWLKAPFIYRVHEVPDDEKII
TLREFLYNLGYTIKGTNNIKPKSLQQILEKAKGKPEQRLINTMLLRSLKRAQYSEMNLGH
FGLASLYYTHFTAPIRRYPDLAIHRILREQQENKLDLKRQKKLGKLVEKIAKISSERERI
AEEAERESVDLKIAEYMSTKIGQVYDDAIISGVTPFGIFVELDNTIEGLVHVSNIEDDYY
HFNEKTMILYGERTGRTFRIGDIVKVKVYKVNVAERQIDFVLAD
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgcctttaaatgagcaattgttggactttatgaaggaaaaagcgtataaacctatgacc
gaaggggaacttatttcagcattgaatattgataaaagtgaaatagatctccttataaaa
acccttgattatatggaaaaaaccggaatggtggtaaaaaaccgcaggggaagatatggt
gttccggaaaaaatgaatttgatagcgggtcaattggaatgccatccgggaggatttgct
tttttagtgcctaataacacagaacaggaagatatttatatcagtcgtgaagatatgaat
ggtgcaatgcacggcgatttggtcttagttcgacctaaaataccggcagacaggactttg
aaaactcagggcgaggtaattcgcatcttaaaacgagctaataaaaaaattgttgggact
gtagaaagaggtaagcaattttcttttgtaataccagatgataagagattattctatgat
gtatttattccaaaagaaaaagcaaaaggtgcaaaaacagggcataaggttgtcgcacag
attacggagtggcctggtaagtatagaaatccagcaggagagatagtagaaatattaggt
catcaagacgaacccggtattgatgttttatctataataaagaagtacgaccttcctcta
gaatttccgccaaaggttatgaaacagttagaacaaattcctgatgaagtaagagagcaa
gatttaagaggcagaaaggattttagaaacttaaaaacggtgaccattgatggtgaagat
gctaaagatttggatgatgcggtttctattgaaaaaactaatgatggttatagactggga
gttcacattgctgatgtgagttattacgtaaaggaaaaaagccctttggatgcagaggct
ttaaaaagaggttgtagcgtttacttggtggatagagtaattccaatgctgccgccaaaa
ctttccaatggtatatgtagtcttaatcctcaagtagaccgacttactatgagtgtaata
attgattttgacgaaaatgccgatgttaagagttacaaaataacgcccggagttatcaaa
acctgtgaaagaatgacatatactcaagtaaataaaattttggaagaaaaagatccggaa
gttatgaaacgttttgattacttgatagatgatttaattttaatgaaacagttagcagaa
aaactgacacagaaacgatttgcaagaggcagtctggattttgatttagatgaaactaag
gttattctcgatgatcaaggacggccaatcgatgtagtaaaagaagagagacgaatatca
aatcgcattatagaagaatttatgattgcggctaatgagatagtggcagagcatatgttc
tggctgaaagcaccttttatttacagagttcatgaagtgccggatgacgaaaaaattatt
actctgcgagaattcctctacaatctaggctacaccataaaaggaacaaataacataaaa
cccaaatctctgcagcaaatcttggaaaaggcaaaaggtaagcctgaacagcgtttgata
aacacaatgctgctgagatctttaaaacgagcccaatatagtgagatgaatttaggccat
tttggccttgcgtcactttattatactcattttacagctcccatacggcgctatccggat
cttgcaatacacaggattttacgggaacaacaagaaaataaactggatttaaagcgtcag
aaaaagctaggtaaacttgtagaaaaaatagctaaaatatcttctgagcgtgagcgtatc
gccgaagaagcagaaagagaatccgttgatttgaaaattgctgaatatatgtctacaaaa
attggacaggtgtatgatgatgctattatttccggagttacaccttttggcatttttgtt
gaactggacaacaccatagaagggcttgtgcatgtaagcaatattgaagatgattactat
cactttaatgaaaaaaccatgatattatacggtgaacggacaggaaggacttttcgaata
ggtgatattgtgaaagtcaaggtgtacaaagtaaatgtcgctgaaaggcaaatagatttt
gtgttggcagactga
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