Tepidanaerobacter acetatoxydans Re1: TepRe1_2503
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Entry
TepRe1_2503 CDS
T01495
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tep
Tepidanaerobacter acetatoxydans Re1
Pathway
tep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TepRe1_2503
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tep03019
]
TepRe1_2503
03400 DNA repair and recombination proteins [BR:
tep03400
]
TepRe1_2503
Enzymes [BR:
tep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TepRe1_2503
Messenger RNA biogenesis [BR:
tep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TepRe1_2503
DNA repair and recombination proteins [BR:
tep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TepRe1_2503
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_40
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
HTH_24
Sigma70_r4_2
GerE
UPF0122
Cas3-like_C_2
Sigma70_r4
Motif
Other DBs
NCBI-ProteinID:
AEE92603
UniProt:
F4LUF8
LinkDB
All DBs
Position
complement(2610983..2613172)
Genome browser
AA seq
729 aa
AA seq
DB search
MGIYETLKTYFGYDNFKKGQEKVVNAILAGRDVLGIMPTGGGKSLCYQLPATMLEGVTIV
VSPLISLMKDQVDSLNEMGLAGTFINSTLDYDEFITRLNEIRNGKYKLIYVAPERLNTNL
FLNLAKDMKISLVAIDEAHCISQWGHDFRPSYLEIPKFINSLYPRPVVAAFTATATKEII
EEIKNLIGLKNPLEVITGFDRPNLFYQVVKPSNKFSYLLNYLKNNYTNESGIVYCATRKT
VESLVKKLQDYDISVVGYHGGMSSEARQENQDNFMLDKVRIIAATNAFGMGIDKPDIRFV
IHYNMPKNMEAYYQEAGRAGRDGEKSDCILMYSPADIVKQKIIIQSENLSPERETAMYQN
LQYLVDYCHTDDCLRNKILVYFGEDAQQKNCKNCGNCLDQSERVDITTEAQKILSCIYRV
NQNYGVNTVVQVLRGSKSKRVIEYGLDKISTYKIMQEYSSDAIKEMIMALVSNGYIHMTA
DKFPILKLTDISWEILHGKTKFFHKKDLLQKANLSKEKRLFAERINNNFDKELFKRLKNL
RQTIAQEKNLPTYIIFHDSSLREMAAFMPRNREEFFKIKGVGQKKYESYGEEFVCLINEY
IQTEGLDVNELRRQIANNTMIDSLPGELQEDNTKTGRYELTYNCYLKGLSLKEIAQQRNL
TENTIINHLERCQQEGKIVDWSRFIDSEKEKQILNAIEKVGAEKLKPIKEALPEEISYSD
IRLVICKHL
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgggtatatatgaaacattaaagacgtattttggatatgataattttaaaaaaggccag
gaaaaggtggtaaatgcaatacttgcaggcagggatgttttggggataatgcccacaggg
ggaggtaaatccctgtgttatcaactgccggcaactatgttagaaggtgtaactatagtt
gtatcaccgcttatttctctgatgaaggaccaggtagattctttgaatgaaatgggctta
gcgggaacttttataaacagtaccttagattatgatgaatttatcacaaggcttaatgaa
atacgaaatggcaagtacaaattaatatatgtagcgccggaacgcttaaacaccaatttg
tttttaaatttggcaaaggatatgaaaatctcactggtagccattgatgaggcacattgt
ataagtcaatggggtcatgattttagacccagctatcttgaaatccccaaattcataaat
tcactttatcctcgaccagtggtagctgcttttacagctacggctaccaaggaaattatt
gaagaaataaagaatttaataggcctaaaaaatccccttgaggtcataacagggtttgac
aggcctaatctgttttatcaggttgtaaaacccagcaataagttttcatatttgctgaac
tacttgaaaaacaattataccaatgaatccgggatagtatattgcgctaccagaaagacc
gtagaatctctagtaaagaaactccaagattatgacatttcagttgttggatatcacggc
ggtatgagctcagaggcaaggcaagaaaatcaagataatttcatgctggacaaggttagg
ataatcgcagccacaaatgcttttggaatgggaatagacaaacctgatataaggtttgtg
attcactataatatgcctaaaaatatggaggcttattaccaggaagcgggcagagcgggc
cgcgatggggagaaaagcgactgcattttaatgtattctccggcagacatcgtaaaacaa
aagattataatacaaagtgaaaatctttctcctgagcgggaaactgctatgtaccaaaat
ctccagtatttggtagactattgtcatactgatgattgtctcagaaataaaatattagtc
tatttcggtgaagatgcacagcagaaaaactgtaaaaattgcggcaactgcttggaccaa
tcggaaagggttgatattacaacagaagcacaaaaaatattatcatgcatatacagagtg
aatcagaactatggtgtcaatactgttgtgcaggttttgcgaggttcgaaaagcaagagg
gtaattgaatatggtctggataaaatttctacatataaaatcatgcaagagtacagcagt
gatgccataaaagaaatgataatggctttagtatcaaacggatatatccatatgactgcc
gataagtttcccatcctaaagctcaccgatatttcctgggaaatattacatggtaagaca
aaattctttcataaaaaagatttacttcaaaaagcgaatttgtcaaaagaaaaaaggctc
tttgcagagcgaataaacaataattttgacaaagaacttttcaagcggctaaaaaactta
aggcaaaccatagcccaggagaaaaacctgccaacatatataatttttcatgactcgagt
ttaagggaaatggctgcattcatgccgcgaaaccgggaagaattcttcaaaataaagggt
gtcggccagaaaaagtatgaaagctatggagaggagtttgtttgcctgataaatgaatat
atccaaacagaggggttagatgtcaatgagcttaggagacagatagcaaataacaccatg
attgacagcttaccaggtgagttgcaagaggataatactaaaactggccgctatgaactg
acctacaactgttatcttaaaggattgtcgctgaaagaaatagcacaacaaagaaacctt
actgaaaataccataataaaccatttggaaagatgtcaacaagaaggtaaaatcgttgac
tggtcaaggttcatcgattcggaaaaagagaaacagattttaaatgcaattgagaaagta
ggtgcggaaaaactaaaacctattaaagaggctttgccggaagaaattagttattcagat
atacgattggtgatttgcaagcatttatag
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