Trichodesmium erythraeum: Tery_0784
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Entry
Tery_0784 CDS
T00387
Name
(GenBank) RNA polymerase, sigma 28 subunit
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
ter
Trichodesmium erythraeum
Brite
KEGG Orthology (KO) [BR:
ter00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ter03021
]
Tery_0784
Transcription machinery [BR:
ter03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Tery_0784
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
LntA_helical
RBD_LARS1
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
ABG50204
UniProt:
Q117X0
LinkDB
All DBs
Position
1251949..1252959
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AA seq
336 aa
AA seq
DB search
MSKLNQENKNQKKTQTKFGPTTYSSMDTVRTYLHEIGRVPLLTREEEIVYGKQVQQMMQF
LELKEKLEEKLNRTATLLEWAEHLLVSEKVLKQAIKQGQRAKQKMIEANLRLVVAIAKKY
QKRNMEFLDLIQEGTLGLERGVEKFDPTRGYKFSTYAYWWIRQAITRAIAQQARTIRLPI
HITEKLNKIKRVQRELIQSLGRSPTPSEIAQALELEPSQIREYLLMARHPISLDLRVGDN
QDTELQELLEDETSSPDDYITGELLRQDINTLLAELSEQQRRVLVLRFGLEDGKEMSLAK
VGDKLQLSRERVRQLEHQALAFLRRRQAKVREYVAS
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagctaaatcaagaaaataaaaatcaaaagaaaactcaaactaaatttggtcct
actacttactcttcaatggacacagttcgtacctacttacatgagattggtcgtgtacca
cttttaactcgtgaggaagagattgtttatggtaaacaagtgcagcaaatgatgcaattc
ctagaattaaaagaaaaattagaggaaaaacttaatagaacagcaactttactagaatgg
gcagaacatttactagtaagtgaaaaagtacttaagcaagcaattaagcaaggtcaacgt
gccaagcaaaaaatgattgaagctaatcttcgcttagtagtagcgatcgctaaaaagtat
caaaagcgaaatatggagttcttagatttaattcaagaaggtactcttggtttagaaaga
ggggtggaaaaatttgatcctacacggggatacaaattttctacttatgcttactggtgg
attcgtcaggcaattactagagcgatcgcacaacaagctcgtactattcgcctacctatt
catattactgaaaagctcaacaaaatcaaaagagttcagagagaactaattcagagtttg
ggtcgtagtcctactccttctgagattgcccaagctttagaattagaaccttctcagatt
agagaatatcttttgatggcccgtcatcctatttccttagatttaagagttggagataat
caggatactgaactgcaagaacttttggaggatgaaacatcttctccggatgactacata
actggtgagttattgcgtcaagatataaataccttactggcagaattgagtgagcaacaa
cgtcgtgtattggtattgcgttttggtcttgaggatggtaaggagatgtctttagcaaaa
gtgggagataaacttcaacttagtcgtgagcgagttcgccaactagaacatcaagctttg
gcctttttacgccgtcgtcaggccaaggtgcgggagtatgtagctagctaa
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