Tetrahymena thermophila: TTHERM_00006190
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Entry
TTHERM_00006190 CDS
T01020
Name
(RefSeq) CAF1 family ribonuclease
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTHERM_00006190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tet03019
]
TTHERM_00006190
Enzymes [BR:
tet01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
TTHERM_00006190
Messenger RNA biogenesis [BR:
tet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
TTHERM_00006190
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RRM_1
RNA_bind
HisK-N-like
Motif
Other DBs
NCBI-GeneID:
7832656
NCBI-ProteinID:
XP_001008100
TGD:
TTHERM_00006190
UniProt:
Q22SB7
LinkDB
All DBs
AA seq
578 aa
AA seq
DB search
MDIDRNNFKDNYQKIIQLIQSCDFISFDCEFSGLATERFSKIRKYDSDEDIYQKLKHTVQ
NYHLLQIGLCIYTFCKVQKKYIAYPYNIYLNPVYTTSSESIKKQIIQLECFNFMAVNGLD
FNKLYSSGLSYIKLAQKEKILENSKYQQNHGIALSKASRDALEQIVKQIQEYDQDNNNTK
DVTIECKSQYLCTKILKKQIGQAIYSCQNVNVDKGQTNTQLIIRKKKPTQNQYFKNKQAQ
DIDDDENNNNNGTEEIKQNGDGDDVSNPSHSSSEIDLLGFSLIVEAIVNSKRPIIGHYMG
YDLFYFYDHFIDVLPNTFVEFVEKVNKYFPYVIDTKVLARKLQNKVKKLPLHLEGLYRAV
AKDEKCLKKHHNTVLTNDPQFSKYTKEGQLHEAGFDSYITGASFIGMCYFEKFEQEKEKQ
LKDVPQRTKKGKVVQEYQDKHDQILKQVMETFIDPNFAKEHLNHIFLQGGTFYFNHEFQV
ARDSFDINHNKEFLNNTLFIKFDPQISFQNLADHFSQFGDAEISIVDTNLAYVEYEQFEL
FEGIEDKLDHIIPLLKNDKIEISKYVDRKRFTAFSYFN
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggatatagatagaaataattttaaagacaattattagaaaatcatttaactaatttaa
tcatgtgattttatttcttttgattgtgaattttcaggtttagctactgagcgcttttca
aagataagaaagtatgacagtgatgaagatatttattaaaagttaaaacacactgtttaa
aattatcatttgctataaattggactgtgcatttatactttttgcaaggtttaaaaaaaa
tacattgcctatccttataatatttatttgaatccagtttatactactagttcagagtct
attaagaagtaaatcatttagttagaatgctttaatttcatggcagtaaatggattagat
ttcaacaaactttattcttctggattgtcttacataaagcttgcataaaaagaaaaaatt
ttggaaaacagcaagtactaatagaatcatggaatagctttaagcaaggctagtcgtgat
gctttggaacaaattgtgaagtagatttaggagtatgaccaagataacaacaatacaaaa
gatgtaacaatcgagtgtaaatctcagtatttgtgcacaaagattcttaaaaagtaaatt
ggacaagctatttactcttgttaaaatgtaaacgtagataagggttaaacaaatacttag
ttgattattagaaaaaagaaacctacacagaaccaatattttaaaaataagtaagcctaa
gatatagatgacgatgaaaataacaataataatggtactgaagaaatcaaataaaatgga
gatggagatgatgtttcaaatccttctcattctagttcagaaatagatttactgggtttc
tcattaattgttgaagcaattgtcaactctaagagacctattataggacattatatggga
tatgatctattttatttctacgatcacttcattgatgttttaccaaatacttttgttgaa
tttgttgaaaaggtaaataaatacttcccatatgtcatagatactaaagtgttagctagg
aaattgtaaaataaagttaaaaaactacctcttcatttagaaggactttacagagctgta
gcaaaagatgaaaaatgcttaaaaaagcaccataacactgttttgacaaatgacccataa
ttctctaagtacacaaaagaagggtaattgcacgaagctggttttgattcgtacattact
ggagcttcttttataggaatgtgttactttgagaagtttgaacaggagaaggaaaagtaa
ttgaaagatgttccttaaagaactaaaaaaggcaaagttgtgtaagaatactaagacaaa
catgattaaattcttaaacaagtaatggaaacttttattgatccaaattttgcaaaagaa
catttaaatcatatcttcttgcaaggaggaaccttttactttaatcacgagttttaagtt
gccagagattcttttgacatcaaccacaacaaagaatttctcaataatactttatttatt
aaatttgatcctcagatttccttctaaaatttagctgatcatttctcatagtttggagat
gcagaaataagcattgtggatacaaatttagcatatgtagaatacgaacagtttgagtta
tttgaaggaattgaagataaattagaccacattattcctcttttaaagaatgataaaata
gaaattagcaaatatgttgatagaaaaagatttactgctttttcatattttaattga
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