Tetrahymena thermophila: TTHERM_00077230
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Entry
TTHERM_00077230 CDS
T01020
Name
(RefSeq) DNA-directed RNA polymerase II protein
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03020
RNA polymerase
tet03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TTHERM_00077230
09124 Replication and repair
03420 Nucleotide excision repair
TTHERM_00077230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tet03021
]
TTHERM_00077230
03400 DNA repair and recombination proteins [BR:
tet03400
]
TTHERM_00077230
Enzymes [BR:
tet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TTHERM_00077230
Transcription machinery [BR:
tet03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
TTHERM_00077230
DNA repair and recombination proteins [BR:
tet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
TTHERM_00077230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
7834404
NCBI-ProteinID:
XP_001015664
TGD:
TTHERM_00077230
UniProt:
Q23G41
LinkDB
All DBs
AA seq
1226 aa
AA seq
DB search
MDEEESFFEGENSAPVYDDELNENIDQDDCWKIIDEYFKDNGLCSHQIKSYNHFIESLPL
IMEDFKIEVRPTENYMNSNKKEQQIRSQTSYTLTFDRPRKPLPPQKFHMERTFGWGRRGQ
DAQSSSHAQKIYPMMARISDLDYFVEIKIPVQLVRTIKHPDGTEQKELITSRDKNQNLIT
LFKLPVMVQSMYCSLAGENLEGRIKHGECQFDQGGYFIIKGSEKVIIAQERMAFNFVYVF
QQKDPKMPWIAEIRSIRDKTNAVQSKFALKLKLRDGEYQLYARCKLINEDIPIFVLLKAL
GCVESDKEMMERIFYNLKDPKNEQMMEMLRSSLLLAQHCNNKREALIFIGYRINATTNYR
GSQEAMQSAEDTLKLYLLPHIGTQESDNDKKLFFIGYMIQKLLNAALGKTQEDDRDHYGK
KRLDMAGALISQLFKERLRIFQKNAKKNLQQKINDISRDAQKSLNVIVDIFDHKLISDHI
RLALATGNWGQTADGEVVKTGVAQVLKRDTSLFATMSHMRRVNAPMKSAAKLARPRQLHN
THYGLICPAETPEGQKIGMVKNLSLLAQVSLGLSSQDNLKIQEQLEEQINQFDILNLKLE
KIPYQTKVFFNGNWIGFTETPEQIIDVFKEIRRLQKIDGFSIVRDIINKEIRIYTDQGRG
MRPVFTVQEICEGKNRLKITKSKLYAILQQFEGKAFQKLIDEGFIELLDVEEEEGALIAV
DINDFYHTDDPRRTNLPFTHCEIHPAMILGVCASVIPFGHHNQGPRNTLQSAMGKQAMGL
NSTNFHMRLDTLCHILYYPQIALASSKSLQYITAKDIPIGSNAVVAIACFTGYNQEDSII
INQSAIDRGLFRSILYRTYKTTEKKEHMGLNPVIEHIRFPDEKKTIIPASYSFLKLDYDG
IIPPGTQVTGEDVLIGKVVELPKTEGSDKQYKDVSLGCRRSEIGYVDTVILSEDKDGMYI
VKVKLRSNRIPQIGDKFASRHGQKGTCGMTIRGEDLPYNIEGIIAELVINPHCIPSRMTI
GHMIEGLNSKLSSLKGIWGDATPFSGIKLQDIASELHTYGYQRYGNEVLYNPYTGMRLST
QIYYGPTFYQRLRHLVDDKMYSRSRGPVVAIVRQPTHGRSRGGGLRFGEMERDCIIAHGT
SNFLKERTFGVSDQFRTHVCSRCGLFAKADVTNHKYDCTGCSQGDKKHYKIVQVYLPYAA
KQLIQELMAMHIVPRIKVDVTSKKYV
NT seq
3681 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggaagaatcatttttcgaaggtgaaaacagcgcacctgtttatgatgatgaa
ttaaatgaaaatatagattaagatgactgttggaaaattattgatgaatatttcaaggat
aatggtctctgttctcattaaattaaatcttacaatcactttattgaatctcttccttta
atcatggaagactttaagattgaagtgagacctactgaaaattatatgaattctaataaa
aaggaatagcaaattaggagctaaacttcatacactttaacatttgacaggcctcgtaaa
cctttgcctccttaaaagttccatatggaaagaacttttggatggggaagaagaggatag
gatgcttaatcttcaagccatgcacaaaagatctatcctatgatggctcgtatcagtgat
ttggattattttgtagaaattaaaattccagtttagttagtcagaaccatcaaacatcct
gatggcacagaacaaaaagagttaatcacaagcagagacaaaaaccaaaatttaatcaca
cttttcaaattacccgtcatggttcaatccatgtattgcagtcttgcaggagaaaatctt
gaaggtagaatcaaacacggtgaatgttaatttgattaaggtggttatttcattatcaaa
ggttcagaaaaagtcatcattgctcaagaacgtatggccttcaacttcgtttatgtcttc
caacaaaaagatccaaaaatgccttggatagcagaaatcagatcaatcagagacaaaact
aatgctgtttaatctaaatttgctttaaaattaaaacttagagacggagaatatcaactt
tatgcaagatgcaaacttattaatgaagatatccctattttcgttttacttaaagctctt
ggttgtgttgaaagtgataaggaaatgatggaacgtatattttataatttaaaggatcct
aaaaatgaataaatgatggaaatgcttcgttcctccctcttgctcgctcaacattgtaac
aataaaagagaagcccttattttcatcggttacagaattaatgcaaccacaaattataga
ggatctcaagaagccatgcaatcagcagaagatactcttaagctttacttactccctcat
attggtacccaagaatctgataatgataaaaagcttttcttcattggatatatgatttaa
aaattgttaaatgctgctcttggcaagactcaagaagatgatagagatcactatggtaaa
aagagattggatatggctggtgcacttatcagttagttattcaaggaaagacttagaata
ttccaaaagaatgcaaagaagaatttgcaataaaaaataaatgacatatctagagatgct
caaaaatctcttaatgttattgtagatattttcgatcataagttgatttcagatcatatt
agattggctctagccactggtaattggggttagacagcagacggagaagtagtcaaaact
ggtgttgcttaggtattaaaaagagatacttcattattcgcaactatgtctcacatgaga
agagttaatgctcctatgaaatcagctgctaagcttgccagacctcgttaattgcacaat
actcactacggtttaatttgccctgctgaaactcctgaaggttagaaaattggtatggtt
aaaaacttgtctctattggcttaagtttccctaggtctaagttcttaggataacttaaag
attcaagaatagttagaagaacaaattaactaatttgatattcttaatcttaagcttgaa
aagattccttactaaacaaaagtgttcttcaatggtaattggattggttttaccgaaaca
cctgaataaattattgatgtctttaaggaaattagaagattgcaaaaaatcgatggtttt
tctattgtcagagatattattaacaaagaaatcagaatttacactgatcaaggtagaggt
atgagaccagtttttactgtgtaagaaatctgtgaaggaaaaaatagactcaagattaca
aaatctaaattatatgctatcctccagtaatttgaaggcaaggcattttaaaaattaatt
gatgaaggttttattgaacttttggacgtcgaagaagaagaaggtgctttaattgctgta
gatataaatgatttttaccacactgatgatccaagaagaactaatcttcctttcactcat
tgcgaaattcaccctgctatgattcttggtgtctgtgcttccgttattccttttggacat
cacaactaaggtccaagaaatactctttaatctgctatgggtaaacaggctatgggttta
aattcaactaatttccatatgagacttgacactctttgccatattttgtactatcctcaa
attgcacttgcttcaagtaaatctctctaatacattactgctaaagatattcctattgga
agtaatgcagttgtagctattgcttgctttactggttacaaccaagaagatagtattatc
attaattagagtgccatagatagaggtctctttagatctatcctctacagaacttacaaa
acaacagaaaagaaagaacatatgggtcttaatcctgtcattgaacatattagattcccc
gatgaaaagaaaactatcatccctgcaagttattcgttccttaaattggactatgatgga
atcataccacctggaacttaagtaactggtgaagatgtcttgattggtaaagttgttgaa
ttaccaaagactgaaggatctgacaaataatataaggatgtttctttgggatgcagaaga
tctgaaattggttatgttgacactgttattctctcagaagataaggatggtatgtatatt
gtaaaggtcaagcttcgttctaatagaattccataaattggtgataaatttgcttcccgt
catggttaaaaaggtacatgcggtatgactattagaggtgaagatttgccatacaacatt
gaaggtatcattgctgaattggttattaatccacattgtattccctctcgtatgactatt
ggtcatatgattgaaggtcttaattcaaagctatcttctttaaagggtatttggggtgat
gctactccattctctggcattaaattacaagatattgcctccgaacttcacacttatgga
tatcaaagatatggtaatgaagtcttgtacaatccttacacaggtatgagactctctact
taaatttattatggtcctactttctatcaacgtcttagacatttagtcgatgataaaatg
tattctcgttctagaggtccagttgtagcaattgtcagacaacctactcacggtcgttcc
agaggtggtggtttacgttttggtgaaatggaaagagattgtatcattgctcacggtacc
agtaatttcttaaaagaaagaacatttggcgtttctgatcagttcagaacccatgtttgc
tcaagatgtggtttgtttgctaaagcagatgttacaaatcacaagtatgactgtactggc
tgctcttaaggtgataagaagcactacaaaatcgtccaagtgtatctcccatatgcagct
aagcaacttattcaagaacttatggctatgcatattgttccaagaattaaagttgatgtc
actagtaaaaagtatgtttga
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integrated database retrieval system
