Tetrahymena thermophila: TTHERM_00142230
Help
Entry
TTHERM_00142230 CDS
T01020
Name
(RefSeq) MutS domain III protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
tet
Tetrahymena thermophila
Pathway
tet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
TTHERM_00142230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tet03400
]
TTHERM_00142230
DNA repair and recombination proteins [BR:
tet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
TTHERM_00142230
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
Motif
Other DBs
NCBI-GeneID:
7827489
NCBI-ProteinID:
XP_001011061
TGD:
TTHERM_00142230
UniProt:
I7MDR6
LinkDB
All DBs
AA seq
1257 aa
AA seq
DB search
MSPNKKTIKQDVLFQEQTEKKKDSRSSSSKKKKNVEELLCRNLNIKDPKQKQQKSSKKKS
NEHQQSQENQESQETNKQETNIFKDVFEDEQWQENNQNSLDFENENILDLIKNYTFAKQN
IKSQNLQQSNQKNGDKNDKKASLNKQQISDSQKKQLNEMEMEIENEGLSVSTKTSGQKQK
NIYSDEIDSEEEIDLNDSLNKRKKLKKVTKDQIFEKCNKQQQAILQNVELKALKYPLEKE
QGEESDSFDENIQKIDNKEQGAQNEEIVDETDVGELPEFLQKENIKDKKGNKIGSENYDP
TTLFIEESQLKIFKPYMREYWRIKSDHYDKIVLIKLGRFYEAYYEDSFVCNQILQPKYSR
KNKCGFPEEILYPYLSKLTECNLKVVIVDQLETEKQQKERIKQMKSQNIKLTERDKLMNR
DVVAIYTKGTAALQLVRGRKLQLSTSTYILSIVTEKQSFSKKITFGLTLFDSITGKILLA
CFEDDNIYSTFQKIIYVYRPSEIIYRKQTTDIESLRLLSQLPTKPLTTQLNEETIWKPTY
AFNHIADIFGSDDIQNMWPKCLYFYSRSEENPSYQLTYSALSALMYYMKSNLLFDETIPI
ANFIRIDHENNREISDYELKESNCDYKIEEGEQINSLHMEQEDVQKQEDNNYEDKRLIMD
SQTLSNLDILEVSYGNKESNFLLKQYSLLQLLDRTCTKPGERLIKLWVASPLIDKQQIEQ
RLDAIEDLQNHNLLRDQFRDKLSNLSDLENILSRLYSYRVKNKSRGVYFEDVSQQRLREL
KNFFEDIKQILITIKDTFFLESNTFKSKRLKMLVGGNKKDENYNPNDNLHDICLRKILSI
EKKILWIGSKKHIPTPVPGICEAYDNKLKEIEDHENEFSNYIKKIRKQFGDDRIQFCHSK
APYQLEIPIELVKGDKKPADFELTSITKKTQRFHTPQLKQLINKQLLLQDQLKQFLGDFT
CVIFDEFFKYRNNWNQIVNVIAEIDCLISLSQVSFHETMVQKLGFMTRPVIVDQKQDESN
YLKIIQGKHPCVALKKQFQANSIIINTQHNKINYPRVQIITGPNMGGKSTILRSASLIVI
MAQVGCYVPCQYLEFSPFDRIFTRIGMRDLLSQGKSTFYIELEETLQIVKNSNQNSLVLI
DELGRGTSTYDGVALASGVLQYIIEKNKSCCLFSTHSNFLVEQYQNSPMVKLFKMGYELV
PNEKNQIKFTYKLCDGQVEQSFSRNVLDIVGFEKSLIFESHFRSCLINLSLMNAQNH
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccaaacaaaaaaacaataaagtaagatgtcttattccaagaataaactgaaaag
aaaaaagattctagatcaagttcttcaaaaaagaagaagaatgttgaagaattgctttgt
agaaaccttaatattaaagatcctaagtaaaaataatagaaatcatcaaaaaagaaaagc
aatgaacattagtaaagctaagaaaattaagagtcttaagaaactaataaataagaaaca
aatatattcaaagatgtttttgaagatgaataatggtaagaaaataaccaaaactcctta
gattttgaaaatgagaatattcttgatttgataaagaactatacattcgcaaaatagaat
atcaaatcataaaatttataataatctaattagaaaaatggtgacaaaaatgataaaaag
gccagcttaaataaataatagataagtgattcataaaaaaaatagttgaatgaaatggaa
atggagatagaaaatgaaggtttaagtgtttctacaaaaacttctggttaaaaataaaaa
aatatatattcagatgaaatagatagtgaagaagagatagatttaaatgatagtcttaat
aaaaggaaaaagttaaaaaaagttacaaaggattaaattttcgaaaagtgtaataaataa
taataagcaattttatagaatgtagaattaaaggcattaaaatatccactagaaaaagaa
taaggagaagaaagcgatagttttgatgaaaatatttaaaaaatagataataaagaataa
ggtgcacaaaatgaagaaatagttgatgaaacagatgtaggggagctcccagaattctta
caaaaagaaaatatcaaagataagaaaggcaataaaattggaagtgaaaattatgatcca
acaactctctttattgaagaatcttaacttaagatattcaaaccttacatgagagaatat
tggagaattaagagtgatcattacgataaaatagtattaattaagttaggaagattctat
gaagcatattatgaagattccttcgtatgtaattaaatattgtaaccaaaatattctagg
aaaaataaatgtgggtttccagaagaaattctttatccttatttaagtaaattgacagaa
tgcaatttaaaagttgttattgttgaccagttagaaactgaaaagcaataaaaagaaaga
atcaagcaaatgaaaagctaaaatatcaagctcactgagagagataaacttatgaatagg
gatgttgtagcaatttatacaaaaggtacagctgctcttcaattagtaagaggcagaaaa
ttacagctcagtactagcacttatattttgagtattgtaacagaaaaataatcttttagt
aaaaaaattacctttggattaactttatttgactcaataactggaaaaattttgcttgca
tgttttgaagatgataatatttattcaacttttcaaaaaatcatctatgtttataggcct
tcagaaatcatttatagaaaacaaactacagacattgaaagcttgagattactgtcctaa
ttaccaactaaaccattaactacttaattgaatgaagaaacaatttggaaacctacatat
gctttcaatcatatagctgatatttttgggagtgatgacatttaaaatatgtggccaaag
tgtttatatttttattcaagaagtgaagagaacccgtcatattagctaacatattcagca
ctaagtgcactaatgtattatatgaaaagcaatctactttttgatgaaacaataccaatt
gcaaattttatcagaattgatcatgaaaacaatagagagatttcagattatgaattaaaa
gaatcaaattgtgactataaaatagaagagggcgaataaatcaatagtttacatatggaa
taagaagatgtttaaaaataagaagataacaactatgaagataaaaggttaattatggat
agctaaactctaagcaatctagatattttagaagtatcatatggaaacaaagaatctaat
tttttattgaagcagtactctttactttagcttttagatagaacatgtacaaagccagga
gaaagattaattaagctatgggtggcttcacctttaatagataagcaatagattgaataa
agacttgatgcaatagaagatttataaaatcacaatttacttagagatcaattcagagat
aaactttcaaatttaagtgatcttgagaatatactttcgagactctactcgtatagagtc
aaaaataagagcagaggcgtttatttcgaagatgtgtcttagcaaagattaagagaacta
aagaatttttttgaagatataaaataaatattaataactattaaagataccttcttttta
gaaagcaatactttcaaaagtaaaagactgaaaatgcttgtggggggaaataaaaaagat
gaaaattataatccaaatgataatttacatgatatttgcttaagaaagatactttctatt
gaaaaaaagatattatggattggttctaaaaaacatattcctactcctgtaccaggaatc
tgtgaagcatatgataacaaattgaaagagattgaagatcatgaaaatgaattttcaaat
tatatcaaaaaaattagaaaacaatttggggatgataggattcaattttgccatagtaag
gccccttattaacttgagattcctattgaattagttaagggagataaaaaacctgctgat
tttgaactgacatcaattactaaaaaaacatagcgctttcataccccatagttaaaatag
ctaataaacaaacaactattgctacaagattaacttaaatagtttcttggagacttcaca
tgtgttatatttgatgaattctttaaatacagaaataattggaatcaaatagttaatgtc
atagctgaaatagattgtctcatatctctttctcaagtttccttccatgaaactatggta
tagaaactgggatttatgacaagacctgtaattgttgatcaaaaataagatgagagtaat
taccttaaaattatctaaggaaagcatccttgtgtggctctgaaaaaataattttaggcc
aatagtattataataaatacttaacataataaaattaactatcctagagtacaaataata
actggccctaacatgggaggtaaatcaacaatactgagaagtgcaagcttgattgttatt
atggcttaagtaggatgttatgtaccttgccagtacttagaattttctccttttgataga
atatttacaagaataggtatgagagacctactttcttaaggtaaaagtactttctatatt
gaattagaagaaacattatagatagtaaagaattcgaatcaaaacagtctggtacttatt
gatgaacttggtagaggaacatctacttatgatggtgttgctttagctagtggagtttta
cagtatattattgaaaaaaataagtcttgctgtctcttctctacacattctaattttctt
gttgagcaatattaaaatagccctatggtaaagctattcaaaatgggatatgaattagtg
ccaaatgaaaaaaactaaatcaaatttacatacaaactatgcgatggataagttgagcag
tctttttcaagaaatgttcttgatattgttgggtttgaaaaatctttaatttttgaatct
cattttagatcttgccttataaatttatcattaatgaatgcttaaaatcattga
DBGET
integrated database retrieval system
