Tetrahymena thermophila: TTHERM_00161070
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Entry
TTHERM_00161070 CDS
T01020
Name
(RefSeq) NOT2/NOT3/NOT5 family protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tet
Tetrahymena thermophila
Pathway
tet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTHERM_00161070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tet03019
]
TTHERM_00161070
Messenger RNA biogenesis [BR:
tet03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
TTHERM_00161070
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
TTHERM_00161070
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NOT2_3_5_C
RNA_binding
Motif
Other DBs
NCBI-GeneID:
7833957
NCBI-ProteinID:
XP_001009837
TGD:
TTHERM_00161070
UniProt:
Q22W25
LinkDB
All DBs
AA seq
403 aa
AA seq
DB search
MSKKRTPEEVEEAAKNVLKLCESVENQIKSLKQDQHSNDQRDSIVKAISRDLSNLKSIRK
NQLTDVVLKQHGSFQFQFNKEAIYTLQNIVNHADNVIRKVEQNFPNAQKDEFLQWYQDFR
EIMNHRIKELKQKQQQPNNKKVKKPLNQKQNDKNDQLIEAIEFHQQKLDEIKMFLESHIN
ISIPIDSLTAVKQALKDIFNSDSQDELINNENIKFHYDTIESVYESDSTSTTKQEVPQTA
GTNSSFTLFNKSKLLASQQERKKDFSYLTNMLQTSFNNSIQQSDFYPSELTKVSTSNKSL
FPKYKMLSEDVFSKFDLETLFFIFYFQKNTYEQYNAAKTLKNKSWRYHKKYMTWFQRLEA
PKIQEEEYEQGTYVIFDYEKGWIQRKKVDFNFKYTYLEDELKV
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaaaaagaactcctgaagaggttgaagaagcagctaaaaatgtccttaaatta
tgcgaaagtgtagaaaattaaataaaaagtcttaaacaagattagcactcaaatgattaa
agagattcaatagttaaggcaataagcagagatttgagcaatctgaaaagcataaggaaa
aattagcttactgatgtcgttttaaaatagcacggctcattctaattctaattcaataaa
gaagcaatctacactctttagaatattgttaaccacgctgacaatgtgattagaaaagta
gaatagaatttcccaaatgcacaaaaggacgaattcttataatggtattaagatttcaga
gaaataatgaatcatagaataaaggaacttaagcaaaagcaacaataaccaaataacaag
aaggtcaaaaaaccattaaactagaagcaaaacgacaaaaatgatcagcttattgaagcc
attgaattccatcaacaaaagctagatgaaataaaaatgttcttggaatctcatataaac
atttccattcctatcgactcgttaacagctgtcaaataagctcttaaagatattttcaat
tctgacagttaagatgagctcattaacaatgaaaatataaaattccattatgatactatt
gagagtgtttatgaaagtgattcaacttcaacaactaaataagaagtcccttaaactgct
ggcactaacagttcatttactcttttcaataaaagcaagttattagcgtcttaataagaa
agaaaaaaagacttttcatacttgacaaacatgctccaaacaagctttaacaactcaatt
caatagtcagatttctatccttctgaattgaccaaagtcagtacatcaaataaaagcttg
tttccaaagtataaaatgctttcagaggatgtctttagcaaatttgatctagaaactctt
ttctttattttctacttttagaaaaatacttatgaacaatacaatgcagctaaaactctt
aaaaataagagctggagatatcacaagaagtatatgacttggttccaaagattagaagct
ccaaaaatttaagaagaagaatatgaacagggaacatatgtaatttttgattatgaaaag
ggctggatctagagaaagaaagtagactttaatttcaaatatacatatttggaagatgaa
ttaaaagtctga
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