Tetrahymena thermophila: TTHERM_00197810 Help Entry TTHERM_00197810   CDS       T01020                                  Name (RefSeq) CPSF A subunit region protein   KO K10610   DNA damage-binding protein 1 Organism tet  Tetrahymena thermophila Pathway tet03420   Nucleotide excision repair tet04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:tet00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     TTHERM_00197810   09124 Replication and repair    03420 Nucleotide excision repair     TTHERM_00197810  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04121 Ubiquitin system [BR:tet04121]     TTHERM_00197810    03400 DNA repair and recombination proteins [BR:tet03400]     TTHERM_00197810 Ubiquitin system [BR:tet04121]  Ubiquitin ligases (E3)   Multi subunit type E3    Cul4 complex     Adoptor protein      TTHERM_00197810 DNA repair and recombination proteins [BR:tet03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     GGR (global genome repair) factors      Cul4-DDB2 complex       TTHERM_00197810     TCR (transcription coupled repair) factors      Cul4-CSA complex       TTHERM_00197810 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  CPSF_A WD40_CDC20-Fz Motif Other DBs NCBI-GeneID:  7827055 NCBI-ProteinID:  XP_001006962 TGD:  TTHERM_00197810 UniProt:  Q22NR8 LinkDB All DBs AA seq 1149 aa AA seqDB search MNSYNFIHNIYKSYSIGPALEARIANNFTSNKKDNASMEIESEQNNNLVNVLILYKQNTI ELWRQNSISKGFLENIAEVQVYCNILKVAVIKSSDSQKSDIIFIISDDLQYRFFRINIKG EVQVLEQGVVQNLDQEKISDVSQVFISQLKINKSESNCIIGIYAYYKNINLIVFKELEGE IKLVAQSQVKKQAIMEKIYNIVAIEQKQNQNQHLIGVYYSYQRESRFAYSQLEIEQIDND QYKLSANKRHCLVHETESQQVYALQLFTQQGLILFSDYKIFYYSYNDKSTIEFTTPFPDE VICHSHVKDTTYFIATQDAAFQSSLYLVNILASSRSIDIKYLGRISPPTSIIQLPEQHIF ITSVDDDCKVIKVHDKFIKNLEGHLEVKLKLSNLSSIYNMKLLESDFNQRLIISSPRKEQ SMNIFQKGMSLIQKGEIKFNSPIREMLVVHSVFIVVSFDFQTLILKLDDKKGSFNVVMNI NCGLLNVFALESSSESQKLVCLVSAQSIKLIDLTRANILSEIAISNKRIILSTINKNILI TADSTNNLQAFNFLNNQISQVETFSYNSRYSYSAINSYGNYIAVALWFQSYIILINASDP TKTHQIDIPTQKVVRSLIFHEENKLLIGYSDGIISLVYYSTDDQNNIVTSNNQKNMVIGY KPVKFRQLRLFSSYCQSSTPACISCISNEVSILSLRKVDESYQRYQKTYFNIQDVNQIDE IEINGVPYLIMAKKNCLSIGGIEVSQKFHIYSFGKDVKEQNEFRCQTELVDVIRNMSISI SIVENEQDDVVCSNILLHSIKNQDLLQQLKFNNTCIYSLLVVGDYFFIGGKQEQNQTYEG FLQVYLVDNENKMIQVDKLAFKIPVMQIQKYSENSIAIILGHENFKIYQMPYTSAQEYSI LKQNTQHKFLQEIVSQSNLNITALSLDCNKRNQILIADRTQGIQLFQEQNKKVMLAAKSP FPVFSTHAKFLGDENIVLSDSNTNIVIFRQNDFAENDFERMKLLVLSAINNGDIVITSLR RKVNTKDVKDKYITTEGLDQVIYGTQKGWIGVIMSLNEQAYTVLQDLQESILQKFKCPLK FDYNKWKSIRNIPQSKSDKSNFIDGEIIFKVLKMSQSELVQVLDGMSAMPKPSIAEMEQL IENLDLLIF NT seq 3450 nt NT seq  +upstreamnt  +downstreamnt atgaattcctacaattttattcataatatttacaaatcatatagcatcggcccagcttta gaggcaaggatagcaaataattttaccagcaataaaaaagacaatgcaagcatggagata gagtcagagtaaaacaataatttagtcaacgtgctcattctttataagcaaaacaccatt gagttatggagataaaatagcattagcaaaggtttcttagaaaatatcgctgaagtgcaa gtttattgcaatattttaaaagtagcagttattaaatcctcagatagttaaaaaagcgat atcattttcattatcagtgatgatctccaatatagatttttcaggattaatatcaaagga gaagttcaagttttagagcaaggcgttgtttagaatctagattaagaaaaaatttcagat gtctctcaagtttttatttctcaattgaaaataaataaatctgagtcaaattgcataatt ggtatttatgcatattataaaaacatcaatcttatagttttcaaggagctagaaggagaa attaagcttgtcgcatagtcttaagttaaaaagtaagcaattatggagaagatttataat atagttgctatcgagcaaaagcaaaattaaaatcaacacttgattggagtttactacagc tatcaaagagaatcgagatttgcttattctcaattagaaatcgaataaatagataatgat taatataaactctctgcaaacaaaagacactgtcttgttcatgaaacagagagctaataa gtatatgctctctaacttttcacttaacaaggattaattttgtttagtgattacaaaata ttttactattcttacaatgataaaagcacaattgagttcacaacaccatttcctgatgaa gtgatttgtcattcacatgtaaaagatactacatacttcatagccacttaagatgcagct ttccaatcatcactttacttagttaatattttagcttcttctagatctatagatattaaa tatctaggtagaatatctcctccaacaagcataatttaattgccagaataacacattttc attacatctgttgatgacgactgcaaagtgataaaagtacatgataagtttattaagaat ttggaaggtcatcttgaagttaagctaaaactttctaatttatcatcaatatataatatg aaattgctagagagtgactttaattaaagattgataatatcaagtccaagaaaggagcaa tcgatgaatattttctaaaagggaatgagcttaatttaaaagggagaaatcaaattcaat tctccaattagagaaatgctagtcgtccatagcgtatttattgtcgtaagttttgatttt tagactttaatcttgaaattagatgataaaaaaggctcatttaacgttgttatgaatatt aattgtggtttattgaatgttttcgctttagaaagtagctctgaatctcaaaagctagta tgtttagtatctgcttaatccattaaattaattgacttgactagagcaaatatactttca gaaatagctatctcaaataaaagaataattttaagcacaatcaataaaaatattttaatt acagctgactctactaataacttgcaagctttcaattttcttaataattaaattagtcaa gtagaaaccttttcttataattcaagatactcctatagtgcaattaattcctatggaaat tacatcgctgtagcattatggttctaatcgtatattatcctcatcaatgcaagtgatcca acaaaaacccatcaaatagatattcctacttaaaaagtagttcgcagtttaatcttccat gaagaaaataaattgttaattggatatagtgatggtattatcagcttagtctactattca actgatgatcaaaataacatcgttacttctaacaattaaaaaaatatggttataggatac aaaccagtaaaatttagatagcttcgactattctcgtcttactgttaatcaagcactcct gcttgtatatcttgtatttcaaatgaagtcagcattttgtcattgagaaaagtggatgaa tcttactaaagataccaaaagacttactttaatatttaggatgttaatcaaatagatgaa atcgaaattaatggagttccttacttaataatggcaaaaaagaattgtttatcgattggt ggaattgaagttagttaaaaattccatatttatagttttggtaaggatgtcaaagaacaa aacgaattcagatgctaaactgaattggttgacgtaattagaaatatgagtatttccatt agcatagtagaaaatgagtaagatgatgttgtttgctctaatattttacttcactcaatt aaaaattaagatttactataataacttaaatttaataacacatgcatttactctttattg gtagtaggagattatttcttcatcggaggaaagcaagagtaaaattaaacttatgaagga ttcctttaagtttacttagtggataatgaaaacaaaatgatttaagtagataaattagca tttaagattcctgttatgcaaatttaaaaatatagtgaaaactccatagcaattatatta ggacatgaaaactttaaaatttactaaatgccttacacaagcgctcaagaatactcaatt ttaaaatagaatacccaacataaattcttataagaaatagtctcataatcaaacctaaac ataactgccctttctttggattgcaacaaaagaaattagattttgattgctgatagaact taaggtatttagctattttaagaataaaacaaaaaagttatgcttgctgccaagtctccc ttcccagtcttttctacccatgctaagttcctaggagacgaaaacatagttttgtctgat tcaaacactaatattgtgattttccgttagaatgattttgcagaaaacgatttcgaaagg atgaaattgctggttttatcagcaataaataatggtgatatagtaataacttctttaaga agaaaggtgaacactaaagatgtgaaagataaatatattacaactgaaggattagattaa gttatttatggtactcaaaaaggttggattggagttataatgtctttgaatgaataagct tacacagtgttacaagatttacaagaatctattttgcaaaaatttaaatgtcctcttaaa tttgactacaataaatggaaatctataagaaatattccatagagcaaatcagataaaagt aacttcattgatggagaaatcattttcaaagttttaaaaatgagccaatcagagcttgtt taagttttagatggaatgtcagcaatgccaaaaccctcaatagcagaaatggaataacta atcgaaaatttagacttattaatattctga

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