Tetrahymena thermophila: TTHERM_00213600
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Entry
TTHERM_00213600 CDS
T01020
Name
(RefSeq) replication factor C subunit 5
KO
K10756
replication factor C subunit 3/5
Organism
tet
Tetrahymena thermophila
Pathway
tet03030
DNA replication
tet03410
Base excision repair
tet03420
Nucleotide excision repair
tet03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TTHERM_00213600
03410 Base excision repair
TTHERM_00213600
03420 Nucleotide excision repair
TTHERM_00213600
03430 Mismatch repair
TTHERM_00213600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tet03032
]
TTHERM_00213600
03036 Chromosome and associated proteins [BR:
tet03036
]
TTHERM_00213600
03400 DNA repair and recombination proteins [BR:
tet03400
]
TTHERM_00213600
DNA replication proteins [BR:
tet03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
TTHERM_00213600
DNA Replication Termination Factors
ELG1-RFC complex
TTHERM_00213600
Chromosome and associated proteins [BR:
tet03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
TTHERM_00213600
DNA repair and recombination proteins [BR:
tet03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
TTHERM_00213600
Check point factors
HRAD17(Rad24)-RFC complex
TTHERM_00213600
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
RCF1-5-like_lid
AAA_22
AAA_14
AAA_11
AAA_assoc_2
RuvB_N
DUF815
AAA_30
AAA_16
ATPase_2
AAA_24
ResIII
AAA_7
bpMoxR
AAA_5
IstB_IS21
nSTAND3
AAA_18
Viral_helicase1
NPHP3_N
PhoH
AAA_19
AAA_28
AAA_3
PPV_E1_C
RNA_helicase
DEAD
Mg_chelatase
TIP49
DO-GTPase1
Torsin
SRP54
MCM
CbiA
Bac_DnaA
AAA_2
TsaE
SFTA2
AAA_29
SLFN-g3_helicase
ABC_tran
AAA_23
AAA_25
Motif
Other DBs
NCBI-GeneID:
7829061
NCBI-ProteinID:
XP_001007155
TGD:
TTHERM_00213600
UniProt:
Q22N75
LinkDB
All DBs
AA seq
345 aa
AA seq
DB search
MEEEIPITVETKQKQQNIPWVEKYRPENLDNVISHEYIVATIKKFIEEDKKLPNLLFYGP
PGTGKTSLIVALAKQLYGKNYKQLVLELNASDDRGIDVVREQIKTFASTANFGMVGKGTK
LIILDEADSMTNQAQFALRRIIEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKHIPYQ
DAKLRIAQICNAENLKYKNSGIEAVFKLCDGDMRRVVNMLQSLSLQGYGSDEQVEITDEL
VYKFTGNATPKDIENIINTMNNKSISESYEIIQSYQVEKGISLQVMLKEISLFLMNTSYP
SLALEFLVKRLADLEYRMSINCDEKVQTLSLISAFTEVRQLLRRP
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggaaatacccattacagttgaaaccaaatagaagtaatagaatattccttgg
gttgaaaaatacagacctgagaacttagataatgtcatttcacatgagtatattgttgca
acaattaagaaatttattgaagaagataagaagcttcctaatttattgttttatggacct
ccaggaacaggtaagacctcattaatagtagctttagccaaatagttgtatggaaagaat
tataaatagcttgttttagaacttaacgcttctgatgatagaggtattgacgttgttaga
gaacaaatcaaaacttttgcaagtactgccaatttcggtatggttggaaaaggaactaaa
ttaattattttggatgaagcagactctatgacaaatcaagctcagtttgctttgagaaga
attattgaaaaatacagcagcaatgctagattttgcatgatatgtaattacgtctcaaaa
attattcctgctctccaatcaagatgcacaagatttaagttcaagcatattccttattaa
gatgctaaacttagaattgcataaatttgcaatgctgaaaatttaaaatataaaaattct
ggtattgaagcagtattcaagctttgcgatggagatatgagaagagttgtaaatatgctt
caatctctttctttataaggatatggaagtgatgaataagtagaaataactgatgaatta
gtttataaatttacaggtaatgcaacaccaaaagacattgaaaatattattaacaccatg
aataataaatccatttcagaatcatatgaaataatatagagttactaggtagaaaaaggt
atctccttataagttatgttgaaagaaataagtctttttttgatgaatacctcatatcct
agcttagcacttgaatttttagttaaaagattggcagatcttgaatatagaatgtcaatt
aactgtgatgaaaaagtttaaacattatcattaataagtgccttcacagaagttcgttag
cttttaagaagaccttga
DBGET
integrated database retrieval system
