KEGG   Tetrahymena thermophila: TTHERM_00245150
Entry
TTHERM_00245150   CDS       T01020                                 
Name
(RefSeq) replication factor C subunit
  KO
K10755  replication factor C subunit 2/4
Organism
tet  Tetrahymena thermophila
Pathway
tet03030  DNA replication
tet03410  Base excision repair
tet03420  Nucleotide excision repair
tet03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tet00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TTHERM_00245150
   03410 Base excision repair
    TTHERM_00245150
   03420 Nucleotide excision repair
    TTHERM_00245150
   03430 Mismatch repair
    TTHERM_00245150
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tet03032]
    TTHERM_00245150
   03036 Chromosome and associated proteins [BR:tet03036]
    TTHERM_00245150
   03400 DNA repair and recombination proteins [BR:tet03400]
    TTHERM_00245150
DNA replication proteins [BR:tet03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    TTHERM_00245150
  DNA Replication Termination Factors
   ELG1-RFC complex
    TTHERM_00245150
Chromosome and associated proteins [BR:tet03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    TTHERM_00245150
DNA repair and recombination proteins [BR:tet03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     TTHERM_00245150
  Check point factors
   HRAD17(Rad24)-RFC complex
    TTHERM_00245150
SSDB
Motif
Pfam: AAA Rep_fac_C DNA_pol3_delta2 RCF1-5-like_lid Rad17 AAA_22 AAA_16 AAA_assoc_2 AAA_14 AAA_5 AAA_11 DEAD ResIII DNAX_ATPase_lid TIP49_C AAA_30 Gp44_lid AAA_24 AAA_28 bpMoxR RuvB_N AAA_19 nSTAND3 Mg_chelatase AAA_3 SLFN-g3_helicase Viral_helicase1 DUF815 AAA_2 ABC_tran mTOR_dom IstB_IS21 RNA_helicase
Other DBs
NCBI-GeneID: 7828654
NCBI-ProteinID: XP_001023745
TGD: TTHERM_00245150
UniProt: Q245Y3
LinkDB
AA seq 373 aa
MQGKLLFKGQAAPKGAAAGANTKDNNRMEEETKTEELNNNLLPWVEKYRPNKIEEVSYQE
EVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQLYGPTFYKERILELNASDDRGI
QIVRDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADSMTTEAQSALRRIIEDTSSTTRF
CIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEICKTEDIEYEKEALEKLIKISNG
DLRKSVNLLQSASTLYEKDIKVEVIEEISGSIPDNQVQKLYKLLIGKDFDKLKEGVKQFL
YQGYSPDQLLYQFSEYIISSKDFNEVKKARILEKIALADKGLNERADSELQILNMFSSCL
SVLQNPDTDLKKK
NT seq 1122 nt   +upstreamnt  +downstreamnt
atgtagggcaaattactatttaaaggttaggccgctcctaagggtgctgctgcaggagca
aatacaaaggataacaatagaatggaagaagaaactaaaacagaagaacttaataataat
ttgcttccttgggttgaaaaatatcgtcctaataaaattgaagaagtcagctactaagag
gaagtaataaagtctctctaaggtgttttattatcaggaaatctacctcacttgattcta
catggacctcctggtactggtaaaacttcaagtatccttgcctttgcaaagcaactttac
ggaccaactttttacaaagagagaatcttagaattaaatgcatctgatgatagaggtatt
caaatagtcagagataaaataaaaaaatttgcacaataagttgtctctaagaatccagat
aaatcatttaaatgcccaaatttcaaaattattattttggacgaagcagactcaatgact
acagaagctcagtcagctttaagaagaatcattgaagacacctcttcaaccactcgtttt
tgtattatctgtaactacattactaagattatagaaccattaggtagtagatgtgtcaaa
ttcagatttaaacctattccacttgaagcttaaataactaaactagaagaaatatgtaaa
acagaagatattgaatatgaaaaggaagctcttgaaaaattaattaaaatatcaaacggt
gatttgagaaaaagtgtaaatcttctataatctgcatctactttgtatgaaaaggatatt
aaagttgaagttattgaagaaatttcaggaagtattcctgacaattaagtatagaaatta
tataaacttcttattggcaaggattttgataaattaaaagaaggagttaaatagttctta
tactaagggtattctcctgattaattactttactaattctcagagtatatcattagttct
aaagatttcaatgaagttaaaaaagctagaatccttgaaaaaattgcattagctgataaa
ggtttaaacgaaagagcagactctgagttgcaaatattaaacatgttctcaagctgtctt
tctgttttacaaaatcctgatactgatttaaagaaaaagtga

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