Tetrahymena thermophila: TTHERM_00316180
Help
Entry
TTHERM_00316180 CDS
T01020
Name
(RefSeq) DEAD/DEAH-box helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTHERM_00316180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tet03019
]
TTHERM_00316180
03041 Spliceosome [BR:
tet03041
]
TTHERM_00316180
03009 Ribosome biogenesis [BR:
tet03009
]
TTHERM_00316180
03016 Transfer RNA biogenesis [BR:
tet03016
]
TTHERM_00316180
Enzymes [BR:
tet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TTHERM_00316180
Messenger RNA biogenesis [BR:
tet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
TTHERM_00316180
Spliceosome [BR:
tet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TTHERM_00316180
Complex C
U4/U6.U5 tri-SnRNP related factors
TTHERM_00316180
Ribosome biogenesis [BR:
tet03009
]
Eukaryotic type
Pre-60S particles
Helicases
TTHERM_00316180
Transfer RNA biogenesis [BR:
tet03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
TTHERM_00316180
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
HTH_27
ATPase_2
nSTAND3
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
7836127
NCBI-ProteinID:
XP_001021310
TGD:
TTHERM_00316180
UniProt:
I7ML30
LinkDB
All DBs
AA seq
1093 aa
AA seq
DB search
MLIVYQELIRNMNRFVQQQQIDRQRIKLNLYRLAIRNIPLNYIILKDIQTTYRIKNMGDI
DELFGAFEEEVTEQSVQVDLNAKRKLVESQENGNSEEQYEEISKKQKKDTDENIDEKIYP
DTFVEEVDPNLDADEANDEKQKMYNVEHFEIKNDKGKIENCWHEVFYPEGYEFKPKPKRP
AAKEYPFKLDHFQRKAVNCIECNESVLVAAHTSAGKTAVAEYAIAQSLRDKQKVIYTSPI
KALSNQKYRELQKEFKDVGLVTGDVSINQTASCLVMTTEILRSMLYRGSEITREVAWVIF
DEVHYMRDKERGVVWEETMILLNQNVRYVFLSATIPNAAEFAEWICRIKKQPCHVVYTDY
RPVPLQHFIFPTGGEGIYLIVDHKGTFREDNFQKALSVMGDNIDLTNTDKKKRKKPTEGA
ELNKILKLISTKNLEPAIVFSFSKRDVESYAKAMNNMDLTTQDEKEKIDSVFQSAISQLA
EEDQKLPQITQILPILKRGIGMHHGGLLPIVKEIIEILFQQGWLKILFSTETFSMGLNMP
ARTVVFTSVRKFDGEDFRWIQGGEYIQMSGRAGRRGKDDKGFTILMVDQKMEPEVAKGML
KGQADPLNSSFHLCYNMLINSMRLEDNDPEYIIRRSLHQFQNDKQLPQMKEKYNELVQKK
ESLSIQNESQIAEICKFREQIKIYEEKERRIVIQEKYVLPYLHIGRLIRVQYKNQDWGWG
ISINFHQKKVQQKKKKKSNEDEPEDIIIVDIMCHIKPRQNNEEPKPALITEEGELEVIPM
NLSTITEISSIKLDLPSRLDTLENKLLIKETLKEIRKQFPEVPKIHPIKDMKILNDELIR
VLDKKEKLKESMEKEMQKSEIPNLQQQIEQYEQKQKLHISILRLKEEIEKSQKMVLQDDL
ACMKRVMRRLGFISKDQIVQLPGKVACEVSACDEILATQLLLSNFFNEMSPNHIAALLSC
LVHDENNSQENQQIQDQDLALYFEKVVEIAKGIYTVMQESKMQIEEKDYLGTLKPQLMEV
VYKWCQGSSFADICKLTNCYEGSIIRCMRRLDELLKQMESACKVMGNEILGEKFKEASKN
LKRGIIFAASLYV
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgcttattgtgtactaagaattaattagaaatatgaatagatttgtttagtagcagtaa
atagatagataaagaataaaattaaatttgtatagattagctattagaaatattccgcta
aattatattatattaaaagatatataaactacatatcgaataaaaaacatgggcgatata
gatgagctctttggagccttcgaagaagaagtaactgaatagtcagtttaagtagatttg
aatgccaaaagaaagttagttgaatcttaggaaaatggcaattcagaagaatagtatgaa
gaaatctctaaaaaacaaaagaaagatactgatgaaaatattgatgaaaagatttatcca
gatacatttgttgaagaagtagatccaaatttagacgcagatgaagcaaatgacgaaaaa
caaaaaatgtacaatgttgaacattttgagataaaaaatgacaagggaaagattgaaaat
tgctggcacgaagtgttttatccagaaggatatgagtttaagcccaaaccaaagaggcca
gctgccaaagagtatccttttaagttggatcatttctagagaaaggcagtaaattgcata
gagtgtaatgaatcagttttagtagcagcccacacttcagcaggtaaaaccgctgttgct
gaatatgctattgcccaatctcttagagacaaacaaaaagtcatttatacatctcccatt
aaggcattatcaaattaaaagtacagagaattataaaaggaatttaaagatgtaggttta
gtcactggtgatgttagtattaattaaactgctagttgcttagttatgactactgaaatt
cttagatctatgctttatagaggttctgaaatcacaagagaagttgcttgggttattttc
gatgaagtgcattatatgagagataaggaaagaggtgttgtttgggaagaaacaatgatt
cttttaaattaaaatgttagatatgttttcctttctgctactattccaaatgcagctgaa
tttgcagagtggatttgccgtatcaagaagtagccttgtcatgtagtttacactgattac
agacctgttcctctctagcattttattttccctactggaggtgaaggtatttacttgata
gtagatcataagggcacatttagagaagacaatttttagaaggcattaagtgtaatggga
gataatatagatttaacaaatacagataagaaaaagagaaagaaacccacagaaggagct
gaattaaataaaatattgaagttaatatctacaaagaatcttgaacctgctattgttttc
tctttctctaagagagatgttgaaagttacgctaaagcaatgaataatatggatcttacc
acttaagatgaaaaagaaaaaattgatagcgttttttagagtgctatttcatagcttgca
gaagaagattaaaagttaccttaaattacttagattcttcccattttgaaaagaggtatt
ggtatgcatcatggtggtttgttgcctatcgtaaaagaaattattgaaattttgttctag
tagggttggttgaagattttattctcaactgaaacattttctatgggtcttaatatgcct
gctcgtactgtcgtctttacttcagttcgtaagttcgatggtgaagattttagatggata
taaggtggtgaatatatttaaatgtcaggtagagctggtagaagaggcaaagatgacaaa
ggttttactattttgatggttgattagaagatggaacccgaagttgctaagggtatgctt
aagggttaagctgatcctttgaattcttctttccatttgtgttataatatgcttataaat
tctatgcgtttagaagataacgatcctgagtatattatcagacgttccttacattaattc
tagaatgacaaacaattaccataaatgaaagaaaagtacaatgaattagtttaaaagaaa
gaaagccttagcatttaaaatgaaagctaaattgctgaaatttgcaaattcagagaataa
attaagatttatgaagaaaaggaaagaagaattgttatataagaaaagtatgttttgcca
tatcttcacataggaagacttattagagttcaatataaaaactaagattggggttgggga
atttcaatcaacttccattaaaagaaagtatagtaaaaaaagaagaagaaatctaatgaa
gatgagcctgaagatattatcattgtagacatcatgtgtcatataaaacccagacaaaac
aatgaagaacctaaacctgccttaattactgaagaaggtgaacttgaggttatccctatg
aatctctccacaattaccgaaattagtagcataaagctagacttgccaagcagattagac
acacttgaaaataagctactcattaaagaaaccttgaaggagattagaaagtaattccct
gaagttccaaaaattcacccaatcaaggatatgaaaatcttgaatgatgagttaattaga
gttttagataagaaagaaaagcttaaagaatctatggaaaaggagatgtaaaaatcagaa
attccaaatttgtaatagtaaattgaataatacgagtaaaaataaaaactccacatctct
atcttaagactcaaagaagaaatagaaaagagctagaaaatggttttacaagatgattta
gcttgtatgaagagagttatgagaagattgggattcataagtaaagattaaattgtccaa
ttacctggtaaagtcgcttgtgaagtttctgcatgtgatgaaatattagccacttagtta
ttactctcaaatttctttaatgaaatgagtccaaaccatattgctgccctcctttcatgc
cttgtccacgatgaaaataactcataagaaaaccaataaattcaagattaagatttggct
ttatattttgagaaggtagtagaaatagctaaaggtatatacactgttatgtaagaatca
aagatgtaaattgaagaaaaagattatcttggaaccttaaagccctaattgatggaagtt
gtttacaagtggtgctagggaagctcctttgctgatatctgtaaattaactaattgctat
gaaggatcaattattagatgtatgagaagacttgatgaattgttaaaatagatggaaagt
gcttgcaaagttatgggtaatgaaattcttggagagaaatttaaagaagcctctaagaat
ctcaaaagaggcattatttttgctgcttctttatatgtttga
DBGET
integrated database retrieval system
