KEGG   Tetrahymena thermophila: TTHERM_00348170
Entry
TTHERM_00348170   CDS       T01020                                 
Name
(RefSeq) DNA ligase I, ATP-dependent protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tet  Tetrahymena thermophila
Pathway
tet03030  DNA replication
tet03410  Base excision repair
tet03420  Nucleotide excision repair
tet03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tet00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TTHERM_00348170
   03410 Base excision repair
    TTHERM_00348170
   03420 Nucleotide excision repair
    TTHERM_00348170
   03430 Mismatch repair
    TTHERM_00348170
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tet03032]
    TTHERM_00348170
   03400 DNA repair and recombination proteins [BR:tet03400]
    TTHERM_00348170
Enzymes [BR:tet01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TTHERM_00348170
    6.5.1.6  DNA ligase (ATP or NAD+)
     TTHERM_00348170
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TTHERM_00348170
DNA replication proteins [BR:tet03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TTHERM_00348170
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TTHERM_00348170
DNA repair and recombination proteins [BR:tet03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TTHERM_00348170
   NER (nucleotide excision repair)
    Other NER factors
     TTHERM_00348170
   MMR (mismatch excision repair)
    Other MMR factors
     TTHERM_00348170
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 7836218
NCBI-ProteinID: XP_001022972
TGD: TTHERM_00348170
UniProt: I7LWR8
LinkDB
AA seq 816 aa
MKQGTIKNFFGNSQKKKEELGESNLGSDKKCATQSQKGAETNGQNSKESQQKPDESKSQQ
EESQLKEKPKAQKRRQIIDSSDDEEVPSLATMSISNKQIKKVENENQKNESSKSETKSST
DSSNLSKQILEKPKNEDEKLSQSSKKAAEQQDTKKKPTNNLRKLLDKHFDPIEDAPFYKD
QEVLFGYLCDGFERVNEQEGKNSKAIQIEIMSKIFKSIILLNPDQVYEAYMFCILKIAPD
YESNELGVGREILQKAISNCCGKSVTQIRDSLNKLGDLGKVASEAKSTQKNITNYFQKQA
KEKPPITLNRTFNDLKSIAAASGKDSTAERERIIIKYMNEAKPDEACYFIRFLEQNLKIG
AAEKTMQAALSKAFFEIAHNIKSNHVYTEQQNQLLEEFNFNITRCLCEFPNYYQVIETLK
QIGKDISKLLDICKITIGVPCKPMLAKPTKSIQVILERFKDMTFTCEYKYDGLRGQIHYD
GKDVTIFSRNLENMTQMYPDIVEFIKKHVSQSKTVKNFILDSEIVAFDKNTNKIRPFQQL
ATRGRVNVKLDEIDIKVCVFMFDLIYINDQSLLQTTLQERRQKIQECFVQEPGEFCFAEH
INTEDVEQIQEFLEKSVKVGCEGLMVKTLETNSTYEPAKRSFKWLKLKKDYLDSGLGDTL
DLVPIAAFKGTGKRVGLYGAYLLACYNEDMERYETICKIGTGFSDEILEACYKFFQDKII
PQPQSDYLTKDFKADVWFKPSVVWEIKGADLQISPVYTCAISETNQEKGIGLRFPRLIRV
RDDKDPVDATSPSFIYDIYKQQAVVANDFDDGDDFY
NT seq 2451 nt   +upstreamnt  +downstreamnt
atgaagcaaggtaccattaaaaacttctttggaaatagccaaaagaaaaaggaagaatta
ggtgaaagcaatttaggttctgacaaaaaatgtgctactcagtctcaaaaaggtgctgag
acaaatggttaaaactcaaaggaatcccaataaaagcctgatgaatcaaaatcatagcaa
gaagaatcttaattaaaagaaaaaccaaaagcataaaaaagaagataaataatagatagc
agtgatgatgaagaagttccttcattggctacgatgtctataagtaataagtaaataaaa
aaagtggaaaatgagaactaaaaaaatgagtcttctaaatcagaaacaaaatcatccaca
gattctagcaatttgtcgaaataaatacttgaaaaaccaaaaaatgaagatgaaaaatta
agccaatcatctaaaaaagcagcagaataataagatacaaaaaagaaaccaactaataat
ttgagaaaacttttggataagcactttgaccctattgaagacgctccattctataaggat
taagaagtcttgtttggttatttatgtgatggatttgaaagagtaaatgaacaggaaggt
aaaaattcaaaggctatacaaattgaaataatgtcaaaaattttcaagtcgatcatatta
cttaatcctgactaggtatatgaagcttatatgttttgtattttaaagatagcacctgat
tatgagtctaatgagcttggtgtgggtagggaaatactttaaaaagcaattagtaattgt
tgtggtaaatcagttacttaaatcagagatagccttaataaacttggtgacttaggtaag
gttgcgtccgaagccaaatctacctaaaaaaacatcacaaattatttttaaaagcaggct
aaagaaaagcctcctattactcttaatagaacttttaatgatttgaaaagtattgcagct
gcttcaggaaaggactcaactgcagaaagagaaagaattattataaaatatatgaatgaa
gcaaaaccagatgaagcatgctattttattagatttttagagtagaatttgaaaattggt
gctgctgaaaaaacaatgtaggcagctctttccaaagcattctttgaaattgcccacaat
atcaaaagcaatcacgtttacacagaataataaaactaacttttagaagaatttaacttc
aatatcactagatgtctgtgtgagtttccaaactattactaagtcattgagactttgaaa
taaattggcaaagatatttctaaattattagatatctgcaagatcacgataggcgttccc
tgcaagcctatgcttgccaaaccaacaaaatcaatttaagttattttggaaagattcaaa
gacatgacttttacttgtgaatacaagtatgatggattgagaggtcaaatacactacgat
ggaaaagatgttactatttttagcagaaacctagaaaatatgacatagatgtatcctgat
attgtagaattcataaaaaaacatgtcagctaatcgaaaactgttaaaaattttatttta
gatagtgaaattgtagcttttgataaaaacaccaacaaaattagacctttctaataatta
gcaacaagaggaagagtcaatgtcaaattagatgaaattgatataaaagtttgtgttttt
atgttcgatttaatatatatcaatgactagagtttgctacaaacaacactttaagaaaga
agataaaaaatttaggagtgttttgttcaagaacctggtgagttctgctttgctgagcac
ataaacactgaagatgttgaacaaatttaagaattcttagaaaaatctgttaaggtggga
tgtgaaggcttgatggttaaaactttagaaactaactcaacttatgaaccagcaaaaaga
tcatttaaatggcttaaactcaaaaaagattatttagatagtgggttaggagatacactt
gatttagttccgattgcagccttcaagggtacaggtaaaagagttggattgtatggtgct
tacctattagcttgctacaatgaagatatggaacgttatgaaacaatatgtaaaataggt
acaggattttcagatgaaatcttagaagcatgctataaattcttctaagataaaattata
ccatagccataatctgattatttaaccaaagattttaaagcagatgtatggtttaaacct
tctgtagtttgggaaattaagggagcagatttacaaatatcaccagtatatacttgtgca
attagtgaaacaaattaagaaaaaggtattggtcttagattccctcgtcttatcagagtt
agagatgataaagatccagtcgatgctacttctccttcttttatatacgatatatataaa
caataagctgttgtagcaaatgattttgatgatggtgatgatttctattga

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