Tetrahymena thermophila: TTHERM_00419730
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Entry
TTHERM_00419730 CDS
T01020
Name
(RefSeq) DEAH-box nuclear pre-mRNA splicing factor
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TTHERM_00419730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tet03041
]
TTHERM_00419730
Enzymes [BR:
tet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TTHERM_00419730
Spliceosome [BR:
tet03041
]
Complex C
Other components
Step II factors
TTHERM_00419730
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
HA2_N
HA2_C
DEAD
AAA_22
nSTAND3
AAA_29
T2SSE
Flavi_DEAD
ABC_tran
AAA_19
Motif
Other DBs
NCBI-GeneID:
7824472
NCBI-ProteinID:
XP_001033233
TGD:
TTHERM_00419730
UniProt:
I7M6P2
LinkDB
All DBs
AA seq
806 aa
AA seq
DB search
MCQSQYNQQTNQLVIIVFIIGIDKMDPSQSIEDFRNSLPITEHKQKIIEIVKNNLFCVIT
GDTGSGKSTQLPQYILDSQEILDVLKENQKKYDLQNNKKSKLNHLHEDNKVSVVITQPRR
VAAISMAKRICYERNVSLGDDVGYTIRFDDKTSSKTHLKYMTDGILVRECLQDDTLSKYN
VVILDEAHERSLYTDVLFALIKQAVKKRQGSLKLIVTSATLNTDQFSKFFDNCPVLSMKG
KLYNVEVRYKPILMNLRIEESINIIMKIHLNEGPGDILVFLTGSEECEIAKNQCIERLQK
DLENGVELAGMMIFSLYGSLGSEDQQQIFMKTPENCRKVVFSTNIAETSLTIDNIGFVID
CGYVKQKCYNPRTGMDALIVVPISQVQAVQRTGRAGRTQEGLCFRLYSKKFYDEDMKPHT
VPEIKRVSLNSVVLTLKSMGIHDVINFDYMEHPDREQLLQALKQLYFLQAIEQDGRITDL
GKEMNKFPLEPSYAKSLLTSYMLRCEDEMITLVALLSSEQIWSKPSRVRAQDYERFEECL
KRFADPDGDHFSLLNIYYSWKRNKCSDGYAKSNFFNIRALKQGENIKIQINDLIKNIDKD
VLKKFYKEDSMYLYYKENREKKDSDSKSKSNSQKKEDKYNEKFDQKNQKQQNPVLTQSDI
FRLALASGFYYNSARKVQNSTDSYLLIYPEGNVVDIDPQSVYSITQNYPPHVIFTELGGT
NQVRGVMRYVSQIDPFWVSPYIPMIKNVNAKRLAGLDQNQNKQEIIQKKKTDEEIQKEKQ
DRIQEIEEKKKQALARLNERKKLQKN
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgtgttagagttaatataattaataaacaaattaattggtaattattgtatttattatt
ggtattgataaaatggacccttcctaaagtatagaagattttaggaatagtttaccaatt
actgaacataaacaaaagattattgaaatagtaaagaataatttattttgtgttattact
ggtgatactggttctggtaaatctactcagctacctcaatatattttagattcataggag
attttagatgtgcttaaagaaaattagaaaaaatatgatttgtaaaacaataaaaagtct
aagcttaaccatttgcatgaagataacaaagtgagtgtagtaattacatagcctagaaga
gttgcagctatatcgatggctaaaagaatatgttatgagagaaatgtaagcttaggagat
gatgtaggatatactattagatttgatgataaaacttcttcaaagactcatttaaaatat
atgactgatggtatccttgtcagagaatgtctgcaagatgatactctcagtaaatataat
gttgttatattggatgaggctcacgaaagaagtctgtatactgatgttctttttgcttta
atcaaataggctgtaaaaaaaagataaggttccttaaagttaattgtcacatctgccact
ctaaacactgattaattttcaaagttttttgataattgccctgtactttctatgaaagga
aagctttataatgtggaagttagatacaagcctattttaatgaatttgaggattgaggaa
agtataaacattataatgaaaattcatttaaatgaaggtcctggcgatatattagttttc
ttaactggatcagaagaatgtgaaatagcaaagaattaatgtatagagaggttataaaaa
gatttagagaatggagttgagttagcaggcatgatgatattttcactttatggatcatta
ggttcagaagactagcaataaatatttatgaaaactcctgaaaattgcagaaaagtagtg
ttttcaacaaacatagcagaaacatctcttactattgataacataggatttgtaatagat
tgtggatatgtaaaataaaagtgctataacccaaggacaggtatggatgctttgatagta
gttcctatttcataagttcaagcagtgtaaagaactggtagagctggtagaacataagaa
ggtctttgttttagactttacagtaaaaaattttatgatgaagacatgaaaccacataca
gtgccagaaataaaaagagtttcattgaatagtgttgtcttaacattaaagagtatggga
atacatgatgtaattaattttgattatatggaacaccctgatagagagcagttgcttcaa
gcattgaaataactttattttctacaggctatagaacaagatggaagaattacagatttg
ggtaaagaaatgaataaatttcctttagagccatcctatgctaagtctcttcttactagc
tatatgctccgttgcgaagatgaaatgataactttagttgctttgctctcatctgagcaa
atttggagtaaaccatcaagagttagagcataagattatgaaaggtttgaagaatgttta
aaaagatttgctgatccagacggagatcactttagtctattaaatatttactattcatgg
aagagaaataagtgctcagatgggtatgctaaatcaaacttctttaacataagagccttg
aaataaggagagaatatcaaaatataaataaatgacttaataaagaatattgataaagat
gttttaaaaaaattctataaagaagattctatgtatttatattataaagaaaatagagaa
aaaaaagattcagattctaaaagcaaaagtaactcttaaaaaaaggaagataaatataat
gaaaaatttgatcaaaaaaattaaaaataataaaatcctgtcttgactcaatctgatatc
tttaggttagccttagctagcggcttttattataatagtgctagaaaagtttaaaatagc
actgatagttatttgcttatatatccagaaggaaatgttgttgatatagaccctcaatca
gtttattcaataacttaaaattatcctcctcatgtaatttttacagaactgggtggtacg
aatcaagttagaggagttatgagatacgtttcatagatagatcccttttgggtttcgccg
tatatacccatgataaagaatgtaaatgctaaaagattagcgggattagattagaatcaa
aataaataagaaataatttagaagaaaaaaacagatgaagaaatataaaaagagaagtaa
gatagaatataagaaatagaagagaaaaaaaaataagccttagctcgtttgaatgagcgc
aaaaaattataaaaaaattga
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