Tetrahymena thermophila: TTHERM_00441760
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Entry
TTHERM_00441760 CDS
T01020
Name
(RefSeq) Pre-mRNA-splicing factor ATP-dependent RNA helicase
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TTHERM_00441760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tet03041
]
TTHERM_00441760
Enzymes [BR:
tet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TTHERM_00441760
Spliceosome [BR:
tet03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TTHERM_00441760
Complex C
U4/U6.U5 tri-SnRNP related factors
TTHERM_00441760
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Flavi_DEAD
TsaE
Motif
Other DBs
NCBI-GeneID:
7843290
NCBI-ProteinID:
XP_001033091
TGD:
TTHERM_00441760
UniProt:
I7MD36
LinkDB
All DBs
AA seq
1072 aa
AA seq
DB search
MQYNIEDFINDSLHKILGISDRNIVMYIKGVTQSSKSKDQLIDGLKEMEIYPTDSKSKVF
IDELYMKYVQGTSETTSQRSSYVQEEIRKAAQVQKNSNYQIIEEDPLSITDNAQKKIKTN
DGNPAANNLTDKEKAELAKKKDIEERNEIDKKIKEKDMKKKQALSGGAQLGMNLTAEEKA
ELIPLLQKEARQNYVKGRLDKQVELLKRMIEYDEFLIKNHKVTDEEIKSYEEKKKILEAV
QSTDLTQKEADIYEMPQLFEDDEGKYDRRKAANAQTQKYKDVPYEPSEHEKWEREQTQRN
QVKFGTNTLTKQQQEEQNYKILMENEIQFIKSDIIKEQLLKQKQMLDSMKSKKKSKKSSK
KDKKKSKKKSKDSSDSSEDSEGSSSGDETQDDNIYIKNDQQPQNQQELLQLSEREKMKRV
RQSLPIYKYREELLTLIRDNRVIVMVGETGSGKTTQVPQYLHEVGYTSTGRIGCTQPRRV
AAMSVAARVSEEMGTKLGHEVGYSIRFEDCTSDKTVIKYMTDGMLLRELMMEPDLASYSV
MIVDEAHERTLHTDILLSIIKDLSRARDDLKVIISSATIDAQRFSEYFDNCPIIKIPGRR
FQVDIYYTKAPESDYIQAAVLTVLQIHVTQPKGDILVFLTGQEEIEAAEEMLTARTRGLG
NKIGELLICPIYSSLPSDMQAKIFEPTPAGARKVVLSTNIAETSITIDNIIYVIDTGFAK
QTSYNPRTGMESLIVTPISKASADQRAGRAGRVAPGKCFRMYTKWSFLNELDQNTIPEIQ
RTNLGSVVLMLKSMGINNLVNFDFMDSPPPEMIVKSLEQLYALGAINDEGDLTKLGRRMA
EFPLDPFLSKMLVQSEHYKCVDQIITICAMLSVGNTIFYRPNDKEKKIHADNSRKAFFRP
GGDHLALLNVYNTWADNGFSQNWCFENFIQIRSMRRARDVREQLILLCERVEIDVKDPSL
SIFEDEMNTNICKCICSGFFYNAAKTNLNGTYKTLKNGHSITIHPSSLMFDIKPEWIVYN
ELVFTSKEYVRNVIEVKGEWLIEIAPHLYKEKDLLGDKRKMPKNTGTSDSRN
NT seq
3219 nt
NT seq
+upstream
nt +downstream
nt
atgcagtataatattgaagatttcattaatgatagcttacataaaatattagggatttct
gataggaatatagtcatgtatataaaaggagtgacacagtcaagcaaatcaaaagattag
cttattgatggtctcaaagagatggaaatctatcctacagattcaaagtcaaaagtattt
attgatgaattgtatatgaaatatgtttagggaacaagtgaaacgacttcttaaagaagt
agctacgtttaagaagaaataaggaaggcagcttaagttcaaaaaaatagtaattattaa
attatagaggaagatccactctcaattacagataatgcataaaaaaaaataaaaacaaat
gatggaaacccagctgctaataatttaactgataaagagaaagctgagctagcaaaaaaa
aaagatatagaagagcgcaatgaaatagataagaaaataaaagaaaaggatatgaaaaaa
aagtaagctttgagtggaggagcttagctaggaatgaatttgactgctgaagaaaaagct
gagctcattccacttttacaaaaagaagctagataaaactatgtcaaaggcagattagat
aaataagttgaattattaaagagaatgattgaatatgatgaatttctaattaaaaatcat
aaagttacagacgaagaaatcaagagttatgaagaaaaaaagaaaattttagaagctgta
taaagtacagacttaacataaaaagaagcagatatatatgaaatgccttagctttttgaa
gatgatgaaggaaaatatgataggagaaaagctgctaatgctcaaacttaaaaatataaa
gatgttccttatgaacctagtgagcatgaaaaatgggagagggaatagacttaacgaaac
taagtaaaatttggaactaacactttaacaaagcagtaataagaagaacaaaactataaa
atattaatggaaaatgaaatttaatttatcaagagtgatataattaaagagcaattgctt
aaataaaaacaaatgcttgatagtatgaagagtaaaaaaaaatctaaaaagagttctaag
aaagacaagaaaaaatctaagaagaaaagcaaagattcttcagattcatctgaagactca
gaagggtcatctagtggtgatgagacacaggacgataatatttacatcaagaatgattaa
taaccttaaaactaataagagttactttaattaagtgaaagggagaaaatgaagagagtt
cgccaatcactacctatttataaatatagagaagaacttcttactttgataagagataat
agagttattgtcatggttggtgagactggttcaggtaaaacgacacaagtaccttagtat
ttgcacgaagttggatacacaagcacaggtagaataggttgtactcagcctagaagagta
gcagctatgagtgtagcagctcgtgtttcagaagaaatgggaacaaaattaggtcatgaa
gttggttactctattcgttttgaagactgtacaagcgataaaactgttattaaatatatg
acagatggtatgctacttcgtgaactgatgatggagcctgatttggcatcttactctgtt
atgattgttgatgaagcacatgaacgtactcttcacacagatattttgttgtctattatt
aaagatctttctcgtgctagagatgatttaaaagttattatttcatcagctactattgat
gcttaaagattttctgaatattttgataactgtccaattattaaaattccaggaaggcgt
ttttaggttgatatttactataccaaggcacccgaatctgattatatttaagctgctgtt
ctgactgttctttaaattcatgtcacacagccgaaaggagatatattggtttttctaact
ggttaagaagaaatagaagctgcagaagagatgctaactgcaagaactcgtggtctagga
aataagataggagagcttttaatatgccctatttactcttctttaccttctgatatgcaa
gcaaaaatttttgaacctactcctgctggagcaagaaaagttgtactttcaacaaatata
gcagaaacatctatcactattgataatattatatacgttatagatactggatttgctaaa
taaacttcttataacccccgtacaggaatggagagtttgatagtcactcctatttccaaa
gcatctgcagattaaagagcaggacgtgctggtagagtagcaccaggtaaatgctttcgt
atgtataccaagtggagtttcttaaatgaacttgattaaaatacaataccagaaatttaa
cgtactaatcttggttctgttgtgttaatgttaaaaagtatgggtataaataatttagtt
aatttcgattttatggactctcctcctcctgaaatgattgtcaaatctcttgaataatta
tatgcattgggagcaataaatgatgagggtgatcttacaaagctgggcaggagaatggct
gagtttcctttagatcctttcttgagtaaaatgttagtttaatctgagcattataaatgt
gtggatcagattattactatttgtgctatgctttcagtaggaaataccatattttacaga
ccaaatgataaagagaaaaaaatacatgcagacaattcgagaaaagcattcttccgtcca
ggtggtgaccatctagccctcctaaatgtttacaacacatgggctgataatggattttca
taaaattggtgctttgaaaattttatttaaataagatcaatgagacgtgcaagagatgtt
agagaataattaatattattatgtgagcgtgttgaaatagatgttaaagacccaagttta
agtatatttgaagatgaaatgaatacaaatatttgcaaatgtatttgtagtgggttcttt
tataatgcagctaaaacaaatttaaacggaacatacaagacgttaaaaaatgggcattca
ataaccatccacccaagctccttgatgtttgatatcaagcctgaatggattgtttacaat
gaattagttttcacttcaaaagaatatgttcgtaatgtaattgaagtaaaaggagaatgg
ttaattgaaatagctcctcacctttataaagaaaaagatttacttggtgataaacgtaaa
atgcctaaaaacacaggcacttctgatagtagaaattga
DBGET
integrated database retrieval system
