Tetrahymena thermophila: TTHERM_00469380
Help
Entry
TTHERM_00469380 CDS
T01020
Name
(RefSeq) DEAD/DEAH-box helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03013
Nucleocytoplasmic transport
tet03015
mRNA surveillance pathway
tet03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TTHERM_00469380
09122 Translation
03013 Nucleocytoplasmic transport
TTHERM_00469380
03015 mRNA surveillance pathway
TTHERM_00469380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tet03019
]
TTHERM_00469380
03041 Spliceosome [BR:
tet03041
]
TTHERM_00469380
Enzymes [BR:
tet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TTHERM_00469380
Messenger RNA biogenesis [BR:
tet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
TTHERM_00469380
Spliceosome [BR:
tet03041
]
Complex C
Other components
EJC/TREX
TTHERM_00469380
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TTHERM_00469380
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
7833676
NCBI-ProteinID:
XP_001025134
TGD:
TTHERM_00469380
UniProt:
I7M447
LinkDB
All DBs
AA seq
566 aa
AA seq
DB search
MSNQEEEVPIYDPDDEIEANSTAPVQKHAQGFNTGGHSSFNDFSLKQDLLRSVKEAGFER
PSEVQHQCIPNAIHGKDVLCQAKAGTGKTAVFVLSVLNQLPDDAKPFSCLVLCHTRELAF
QIKNEFKRLGKFTNFKVKAVYGGVEESVDIHTLKTKKPHILVATPGRCLSLIKAKPSVIE
TQNIEYFIIDECDRVLSSNKMRSDVQNIFYELPRKKQVMMFSGTMSDESKKTCRKFLQDQ
IEIFVEDNSKLVLHGLEQYHIKIEEKQKISVLRQLLDQGNYNQVIIFVNKQDRAKYLSKY
LTDKGHDNAFIYRNLDQSERTKIYSEFKEGKNRVLVATDLVGRGIDIERVNLVINFDMPQ
ITEDYMHRVGRAGRFETKGQAISFISTKEDEKVLAEIQSTFSTQIKEYNLKQESQQQIYL
ILIMDKYQNNSFQFLGERNQQDLNSKNVQPQIKFGQINYNYYQRLSINIYYSLCNSFLNS
SQLQVNVYFQKRLFSFLKNKQINKQKSIIPSVFIQLFYNKYIFIKNHFLPHKQTNDSSNQ
KNQNRIKRRNSTYFSQEFTNIQNFIY
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaccaagaagaagaagtccctatctacgatcccgatgatgaaattgaagctaac
tcaactgctcctgtttagaagcatgcctaaggtttcaacactggcggtcactcctcattt
aatgacttttcattgaagtaagatttacttagaagtgtcaaagaagctggttttgaaaga
ccatctgaagttcaacactaatgtatccccaatgcaatccatggtaaagacgtcttgtgc
caagctaaggccggtactggaaagactgctgtgtttgtcttgtcagtgctcaatcaatta
cccgacgatgctaagcctttcagttgtttagttttgtgccacactagagaattagctttc
caaattaagaacgaattcaagcgtcttggtaaattcaccaacttcaaggttaaggctgtt
tatggaggtgttgaagaatctgttgacatccataccctcaaaactaagaagccccatatc
ctcgttgctactcctggtcgttgcctttctttaatcaaggctaagccttctgttattgaa
actcaaaatatagaatatttcattatcgatgaatgcgatcgtgttttgagcagcaacaaa
atgagatctgatgttcaaaatatcttctacgaacttcctagaaagaaataagttatgatg
tttagtggtaccatgtcagatgaaagtaaaaaaacctgccgtaaattcttgcaagattaa
attgaaatcttcgttgaagataattcaaagcttgttttgcacggtttggaataatatcac
attaaaattgaagaaaagtagaaaatctcagttttgcgttaactccttgattaaggtaac
tacaaccaagttattatttttgtcaacaagtaagacagagctaaatatctttcaaagtat
ctcaccgataaaggccacgacaatgccttcatttatcgtaacctcgactaaagcgaacgt
acaaaaatatactctgaattcaaagaaggcaagaatagagttttagttgctactgactta
gtcggaagaggtattgatattgaaagagtcaacctcgttatcaactttgatatgccataa
attactgaagactacatgcacagagtcggtagagctggtcgtttcgagaccaaaggttaa
gctatttctttcatctcaactaaggaagatgaaaaagtacttgctgaaattcaaagtact
ttcagcactcaaattaaggagtacaacttaaagcaagaatcttagtaataaatatattta
atattaattatggataaatattaaaataattctttttaatttttaggtgaaagaaattag
taagacctcaactctaaaaatgtttaaccccaaataaaatttggataaataaattataat
tattattaaagattgtcaattaatatatattattcactttgtaactcattccttaattcg
agtcaactttaagtaaatgtatactttcaaaaaagactatttagtttcctaaaaaacaag
taaataaataaataaaaatcaataataccatcagtatttatttagttattttataataaa
tatatttttattaagaaccattttctgcctcacaagcaaacaaacgattctagcaatcag
aaaaattaaaacagaattaagagaagaaattctacctattttagttaggaatttactaac
attcaaaatttcatttattga
DBGET
integrated database retrieval system
