Tetrahymena thermophila: TTHERM_00586540
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Entry
TTHERM_00586540 CDS
T01020
Name
(RefSeq) exosome complex exonuclease RRP4, putative
KO
K03679
exosome complex component RRP4
Organism
tet
Tetrahymena thermophila
Pathway
tet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTHERM_00586540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tet03019
]
TTHERM_00586540
Messenger RNA biogenesis [BR:
tet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
TTHERM_00586540
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
TTHERM_00586540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
KH_6
ECR1_N_2
RRP40_S1
EXOSC1
DUF3195
FliS
DUF2624
Motif
Other DBs
NCBI-GeneID:
7840465
NCBI-ProteinID:
XP_001019859
TGD:
TTHERM_00586540
UniProt:
I7M2A2
LinkDB
All DBs
AA seq
309 aa
AA seq
DB search
MGDLLKIKDQIDFKKYLHDDMLGLNIVLPGDVIKKEKGFMNGHGTYEENGIIYSSVIGTV
VQTNKLLSVSPLKSYYTPQVGDIVVGRVMEIGDKKWKIEIGSNQYASLHLNSTYIPEQRI
KTDEDELNMRQIMKEGDLACAEIHSINKDKTANLHTRSLKYGKLENGFLVEVFNKLVKTQ
TNHFKKLQCGINIIFSHNGKIWLNNISREGIIKEQKEVEKKQYSYEERQALSIISNLLKL
LDQQNIKISTDLLDELYNYVITKKIEPSNILTQAGSKELKQYLQQKLETQIPKEINKLMK
QGDYLAQDY
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgggcgatttattaaaaattaaagattaaatagacttcaaaaaatatttgcatgatgat
atgcttggtttaaatattgtattgccaggtgatgtcattaaaaaagaaaaaggtttcatg
aatggacatggtacttatgaagaaaacggaattatttattcttcagtaataggaacagta
gtataaacaaataagttgcttagtgtgtcaccacttaagtcatattacactccttaagta
ggagatattgttgtaggaagggttatggaaataggagacaagaaatggaaaatagaaata
ggatctaattaatatgcaagtcttcacttgaattcaacttatattcctgaacagagaatt
aaaacagatgaagatgagttaaatatgagataaatcatgaaagaaggagacttagcttgt
gcagaaattcattctattaacaaggacaagacagcaaacttgcatactagaagtttaaaa
tacggcaagcttgaaaatggatttttggtggaagtatttaacaaactagtgaaaacttaa
actaaccacttcaaaaagttgtaatgtggaatcaatattatattttctcacaatggtaaa
atttggctcaacaatatttctagagaaggcattattaaagagtaaaaagaagtagaaaag
aaataatatagctatgaagaaagataggctctcagcataatctcaaacttacttaaatta
cttgatcaataaaatataaaaatcagcactgatttacttgatgagctttataattatgtg
attacaaagaaaatagaaccatcaaatattctaacataagcaggatctaaggaattaaag
tagtatctgtaataaaaattagaaacataaattcctaaagaaattaataaattaatgaaa
taaggagactatttagcttaagattattga
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