Tetrahymena thermophila: TTHERM_00590200
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Entry
TTHERM_00590200 CDS
T01020
Name
(RefSeq) Pre-mRNA cleavage complex II protein Clp1, putative
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
TTHERM_00590200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tet03019
]
TTHERM_00590200
Enzymes [BR:
tet01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
TTHERM_00590200
Messenger RNA biogenesis [BR:
tet03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
TTHERM_00590200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
CLP1_N
Clp1
ATP_bind_1
TniB
PRK
nSTAND3
AAA_24
AAA_18
AAA_31
Motif
Other DBs
NCBI-GeneID:
7831830
NCBI-ProteinID:
XP_001019928
TGD:
TTHERM_00590200
UniProt:
I7M8U4
LinkDB
All DBs
AA seq
504 aa
AA seq
DB search
MMEEQFICDEKKFIRQEVEKMREFSFNINNEDGLKLFLKEGTAEIFGRELPQYTIQQFQK
GDRFSIFTWTGCVLYLEYMSHSDFFQSTDESQYPIYANINQYLHEMRSQAQDQRKIGPKI
LICGPNQSGKTTVSKTLTNYCCKLGWTPILVDLDPMLNTVMAGGCIGACVCKDSYPTNGI
EIKNKIIFFHGYSRIQLGLLKNQIEVLGNTVQKKLQNNLEQFLKKHNLQTAPDAEGAQQK
TNKQKYPSQQNIQNSTAQIKLPSGVNINQMLLLPQDKQMFSSGCIINMPPLQSREQKEVI
DLIIKHFQVDVIIGLDDQVFNSLKQNQLLTNGYSVIRTTKPSGLKTKEESELVEEARKIN
QKLFQQYFKGLNNDIDCHNQEVNLNDLLVYRLKINEKNSLANTSMQQQKQIYERVDLSKE
NVTKSIVGVLNLTRSSVEKLKEEEIFEKISKSTLSLLVHLSDMRTNQPYVRLFLPGLNME
NIIKENVCVIGDITWFESSSDKKK
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaatagttcatatgcgatgaaaaaaagtttattagataggaggtagaaaaa
atgagggaattttcatttaacataaataatgaagatggtttaaaactctttctgaaagag
ggtactgctgaaatcttcggtagagaattaccacaatatacaatttaataattttaaaag
ggagatcgtttttcaatatttacatggacaggctgtgtactctatttagaatatatgagt
cattctgacttcttttagtctacagatgagtcacagtatcccatatatgcaaacataaat
taatatttacacgaaatgagatcataagcataagattagcgtaaaataggccctaaaatt
ttaatatgtggaccaaactaaagtggaaaaacaactgtttcaaagacactgactaactat
tgctgtaagctgggatggactcctattttagttgatttagaccctatgcttaatacagtg
atggcaggaggatgtattggagcttgtgtctgcaaagactcttatcctacaaatggaata
gaaattaaaaataaaattatattctttcatggatacagtcgcattcaattaggccttctt
aagaattagatagaagtcttaggaaacacagttcaaaaaaagctctaaaataacttagaa
taattccttaaaaagcataacttgcaaactgctccagatgcagaaggagcctaacagaag
accaacaaataaaaatatccatcgtaataaaatatttaaaactcaactgcatagattaaa
ctaccatcaggtgtcaacataaattaaatgctgttactcccttaagacaagcaaatgttt
tcaagtggatgcataattaatatgcctcctctctaatctagagaatagaaagaagttatt
gaccttatcataaaacattttcaagttgatgtgataattggtctagacgattaagtattt
aattctttaaagcaaaactagcttttgactaatggatatagtgttatacgtaccacaaaa
ccttcaggattaaaaactaaagaagagtcagagctagttgaggaagctagaaaaataaat
taaaagctcttttaatagtactttaaaggacttaataatgacattgattgtcataattaa
gaagttaacttaaatgatttacttgtttatagattaaaaataaatgaaaaaaatagctta
gcaaatacttcaatgtaataataaaagcaaatttatgaaagagttgatctttccaaagaa
aatgtgacaaagagtatagttggcgtactaaaccttacaagatcctctgttgaaaaatta
aaagaagaagaaatatttgaaaaaatatctaaaagtactctcagtcttttggttcattta
tcagatatgagaacaaaccagccctatgtacgtttgtttttacctgggctaaatatggaa
aatataattaaagaaaatgtatgtgtaataggagacataacatggtttgaatcatcaagt
gataaaaaaaaatga
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