| Entry |
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| Name |
(RefSeq) XRN 5'-3' exonuclease amine-terminal protein
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| KO |
| K12618 | 5'-3' exoribonuclease 1 [EC:3.1.13.-] |
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| Organism |
tet Tetrahymena thermophila
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| Pathway |
| tet03008 | Ribosome biogenesis in eukaryotes |
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| Brite |
KEGG Orthology (KO) [BR:tet00001]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
TTHERM_00645780
09123 Folding, sorting and degradation
03018 RNA degradation
TTHERM_00645780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:tet03019]
TTHERM_00645780
03009 Ribosome biogenesis [BR:tet03009]
TTHERM_00645780
03016 Transfer RNA biogenesis [BR:tet03016]
TTHERM_00645780
03036 Chromosome and associated proteins [BR:tet03036]
TTHERM_00645780
Messenger RNA biogenesis [BR:tet03019]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
TTHERM_00645780
mRNA degradation factors
5'-3' decay
5' exonucleases
TTHERM_00645780
Ribosome biogenesis [BR:tet03009]
Eukaryotic type
Pre-60S particles
RNases
TTHERM_00645780
Transfer RNA biogenesis [BR:tet03016]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
TTHERM_00645780
Chromosome and associated proteins [BR:tet03036]
Eukaryotic type
Gene silencing
piRNA pathway
TTHERM_00645780
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| AA seq |
1775 aa
MGVPGFYSWLARRYPLILHQIKKGEVPNIDCFYLDMNGIIYKCSKDEGTVFKDLLLQRNI
QEIFSMIFNYIDEMVNLVEPKKVLYLFLDGPCPRAKQNQQRTRRFQSAQSWKDLNDSLRN
CGFLSEGETMKNNSISTGTEFMHDLNKQLHFYICKKFEQDPRWSNLEVFFSGSNVPGEGE
HKIINFMHQYCSSQDYDPTTTHCIYGADADLIMLGLSTHIKYVSILREEMKFQPPVSRAA
KRDRESVTFQMIYLNIVREYMELEYKMLWKKVKKLEFNIERVIDDFLLICCFIGNDFLPR
LYCFNIREGQFEILIQIYKDYLVEADSYLNDNGHINWVGLQQIIQRIAEVELDFIGDKAT
DITKEYKRRIKHQSDKDQEIGDDEVPGVKKGNDKKNSSSEGENDEDDEDFEDEDDDDYDD
DICDDNDEKDQEKNDQKNQVTFQQNFEKNLQEKKKEEDKIIKKEKDFINDLQENYKKDQF
LGKSYYYQQKLNLDFKNFDDIKTLDLLITKYLEGLQFVLLYYYQGCPSWSWYFPFYYAPM
TSDISLFLNYKAEHLSQEIVFDLSEPYPPMKQLMCIIHPENANLLPKPFAQLLTDPNSKL
RSPVDYYPDKFTIDPYGGVFSHEYIVVLPFMDQKLIDDVYSSIDQVKTLTPQERERNQFG
KNIKYKFDHNFAPITIQSTLPNYYKDFQVTLKVETFDIGKVYSPPTNPQGEALSRFPTLH
AKQVIGCEIDKVEKGLQMKIRVKSDLTEADIVNKVRGKPKYDAYCKYPNCEKVQVTGFLT
ESTFKNIWKNKNLSILENLDYSEDSHHSFYLKIKDELSQTFYKKGGIIYNHSNPVIAILL
KYTEGRRTLKGTIIENSDKYEEMFCPLDLLMKEQKIEKVIQVTKCDNIEKEFPIGCKVVI
AQKGNLDGHTGIVTGYTKGKLAQELLVQLKTKPVYLTDNQLKFYSKDDEAFITLKFLSFK
LQLSQDVLLDILDSFSIKIEPNLPSANKLPKMLDVGLNIIRRHLNEVVPELARINEASQN
ISGREKYQQFRELELSPSLVKLIIEYYNAYPKIFAFVAKLSQLRKKDKNANFYSGQIWSK
EGQDPNIELVKLYIWLMKKKESQFCSSTVASKVMHSQKIEQLVKFQDEFVQTKLNIPQKD
QTIHQIDANNAIPAVYSSKQYIYFKDQPFYHEVGDQVIYIGTYNTKNAPFGLQGTIVGIM
DDKFEVVFIKPFIGGVNLGGRCPPQRGLVVQFDEIYNLQGWNNFLQNRDNSKENTLGWNG
WVDEYKPQFREAIKSDKDLQNKQANNETQKLIGEIMHQPEANLKSETSDKPKTNVIAVIK
KQTNGSKGTDTISEVTQEQASAQIAQQQQQGKVTIGPAPTTVPQKTEQKQQTQSTSPSKT
ETQKKPQKETVIYVKKSEVSQQQQVEQKQPSTQITQQEEKKESESVKQEKVEESQQQQIV
QEAALQAQEVQIVKSDQIEVPKEDNSNQNENIQDVSEIEKLLQEQKQFQEEEQKHQILDV
SEIEKQQTDVQEFEIPKECNLEEIEKQMLQDQFEHIKHQDQKDPEMLDVAKFEKEQMELA
QKEAKGQNQESNKFQDDDKDDTQKLSRKQKKLKNKDITGFNPGQSAVQFKNREQVNQEKR
MKRNEKRLMIQEQNLQYQQYQQYYQYLYLWQQQFIKQKTQEMEAFKRRQEEERINKSLAQ
LTNPVTEGESVNQDLINIQNALEQQNSKNSNLPQDIQMVDSSQIEQKLSENIIPQVPLTT
IQQGNVRNEIVGNLTAEDLENFEELERQYLSSLNK |
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| NT seq |
5328 nt +upstreamnt +downstreamnt
atgggagttcctggattttatagttggttagctcgtagataccctttgattcttcactaa
atcaagaaaggtgaagttcctaacatagattgtttttacctcgatatgaatggtatcatt
tataaatgctctaaggatgaaggcactgttttcaaagacttgcttttatagagaaacatt
taggaaattttctcaatgatatttaattatattgatgaaatggtcaacttagtagaacca
aagaaagttttgtatctctttcttgatggcccatgtcctcgtgctaagtaaaaccaatag
cgtactcgtcgtttttagagcgctcaatcatggaaagacttgaatgattctctaagaaac
tgtggtttcctatccgaaggagagacgatgaagaataactctatctcaacaggtacagaa
ttcatgcatgatttgaataagtagctccatttttatatctgcaagaaattcgaataagat
cctcgttggtccaatcttgaagttttctttagtggatccaacgtacctggtgaaggtgaa
cataaaattattaattttatgcattagtattgttcatcctaagattatgatccaactact
actcattgtatttatggtgcagatgcagatcttatcatgttaggcttatctacccatatt
aaatatgtctcaattctgagagaagaaatgaaattttaacctcctgtaagtagagctgct
aaaagagatagagaatcagtaacattttagatgatctacttaaatatagttagagaatat
atggagttagaatataagatgttatggaaaaaagtaaaaaagcttgagtttaacattgaa
agagttattgatgatttccttttaatctgttgtttcattggtaatgatttcctaccaaga
ctgtattgtttcaatattagagaaggacaatttgaaattttgatttagatttataaagat
tatctagttgaagcagattcatatttaaatgataatggtcatattaattgggttggtctt
caatagataatttaaagaatagcagaagttgagcttgattttattggagataaagctaca
gatatcacaaaggaatataaaagacgtatcaagcatcaatcagataaagatcaagaaatc
ggagatgatgaagttcccggagttaaaaaaggaaatgataagaaaaactcctcttcagaa
ggtgaaaatgatgaagatgacgaagatttcgaagatgaagacgatgatgattatgatgat
gatatctgcgatgataatgatgaaaaggattaagaaaaaaatgattaaaaaaatcaagtc
actttctaacaaaattttgaaaaaaaccttcaagaaaagaagaaagaagaagacaaaatt
atcaaaaaagaaaaagattttattaatgatttataagaaaattataaaaaagattagttt
ttaggaaaatcatattattattagcaaaagcttaacttagatttcaagaattttgatgat
attaagacattagatttattgataactaagtatttagaaggtttatagtttgttttgctt
tattactaccaaggatgtccttcctggagctggtatttcccattctattatgctcctatg
acttcagatatcagtttattcttgaattacaaggctgaacatttatcataagaaattgta
tttgatctttccgaaccataccctcctatgaaatagttaatgtgtattatacatcctgaa
aatgcaaatttgctccctaagccttttgctcaattattgactgatcctaattcaaaatta
agaagccctgtagattactatcctgataaatttacaattgatccctatggaggtgtattc
tcacatgaatatattgtagtccttccctttatggactaaaaattaatagatgatgtttat
tcttctattgattaagtaaaaactttaactccttaggaaagagagcgcaattaatttgga
aagaatattaagtacaaatttgaccataactttgctcctattactatttagagcacactt
cctaattactataaggacttttaagtaactttgaaagtagaaacatttgatatcggtaaa
gtatactctccacccacaaatccttaaggtgaagctttatctagattccctactctccat
gctaaataggttattggatgtgagattgataaagtagaaaaaggtttacaaatgaaaatc
agagttaaaagtgatttgactgaggcagatattgttaataaagttagaggaaaacctaaa
tatgatgcttattgcaaataccctaattgcgaaaaagtataagtcactggttttctaact
gaaagtactttcaaaaatatatggaagaataagaatctttccatccttgaaaatttagac
tacagtgaagattctcatcacagtttctatttaaaaataaaagacgaactgtcctaaaca
ttttacaagaagggaggaattatatacaaccattctaatcccgtgattgccattttgtta
aagtatactgaaggtagaagaactttaaagggtactattatagaaaacagtgataaatat
gaggagatgttttgtcctcttgatttattaatgaaggaatagaaaatcgaaaaagtcatt
caagttactaaatgtgataatatagaaaaagagttccctattggttgtaaagttgtaata
gcttaaaaaggaaatcttgatggtcatacaggtattgtgacaggatacaccaaaggaaag
cttgcacaagaacttttagtttaattaaagactaagcctgtctatttgactgacaatcaa
ctaaaattctactcaaaggatgatgaagcattcataaccttgaaatttttgtcattcaag
ctttaattatcataagatgttttacttgatatcttagatagctttagcattaaaattgaa
cctaatcttccttctgctaataaacttccaaagatgcttgatgtaggtttaaatatcatc
agaagacatcttaatgaagttgttcctgaacttgctcgtattaatgaagcatcttaaaat
atttcaggacgtgaaaagtatcaataatttagagaattggaattgagtccttcattagtt
aagttaattattgaatactataatgcttacccaaaaatatttgcttttgttgctaaactt
tcataattaagaaagaaggataaaaacgctaatttttactctggctaaatttggtctaaa
gaaggccaagatcctaacattgaattagttaagctatatatttggttaatgaaaaagaag
gaatctcaattctgtagctcaaccgttgcctcaaaggttatgcactcataaaaaattgaa
tagttggtcaaattttaagatgaatttgtttaaactaagctcaacattccttaaaaagat
tagaccattcattaaatagatgccaacaatgctattcctgccgtctatagctcaaaacaa
tatatttactttaaagattaacctttttaccatgaggtaggtgactaagtaatttacata
ggtacttataacactaagaatgctccttttggactatagggaactatagttggtatcatg
gatgacaaatttgaagttgtctttataaaacctttcatcggaggtgttaatttaggaggt
cgttgtcctcctcaacgtggtctcgtagtttaattcgatgaaatttataacttacaaggt
tggaataatttcttgcaaaacagagacaattctaaagaaaatactttaggctggaatgga
tgggttgatgagtacaaacctcaattccgtgaagctatcaagagcgataaagatctctaa
aataaataagctaataatgaaacttaaaagttaataggtgagatcatgcattaaccagaa
gctaatttgaaatctgagactagtgataagcccaaaactaatgtcatagcagttatcaaa
aagcaaacaaatggttcaaaaggaactgataccatttcagaggtaactcaagaacaagct
tcagcttagatagcttaataacaataataaggcaaagtcactattggacctgctccaaca
actgttcctcaaaaaactgaacagaaacaatagacataatctacttctcctagcaaaaca
gagacctagaagaaaccttagaaggaaactgtcatttatgttaagaaatcagaagttagt
taataataataagtagaataaaaataaccaagcacctaaattacccaataagaagagaaa
aaagaatctgaaagcgttaaataagaaaaagtggaagaatctcaacaacaataaatcgtt
taagaggctgcattataagctcaagaagtataaatagttaaatctgattaaatagaagtg
ccaaaagaagataatagtaatcaaaatgaaaacatttaagatgtctctgaaatagaaaag
ttattgcaagaatagaaacaattctaggaagaagaacaaaagcactaaattttggatgtt
tctgagattgaaaaacaataaactgatgtctaagaattcgaaattccaaaggagtgcaac
ttagaagaaatcgaaaaataaatgcttcaagatcaatttgagcatattaaacatcaagat
taaaaagatcccgaaatgttggatgttgcgaaattcgaaaaagaataaatggaactagct
taaaaagaagccaagggataaaatcaagaatccaacaaattttaagatgatgataaagat
gatacataaaaactaagcagaaagcagaagaaattaaaaaataaagatattactggtttt
aatcctggataaagtgccgtatagtttaaaaatagagaataagttaactaagaaaagaga
atgaaaagaaacgaaaagaggttaatgattcaagaacaaaatctttaatattaataatat
tagcaatattatcaatatctttatttgtggtagtagtaatttattaaatagaaaacttaa
gaaatggaagcatttaagagaagataagaagaagaaaggatcaacaagagtcttgctcag
cttacaaatcccgttacagaaggtgaatcagtcaactaagatctaattaacatacagaat
gctctagaacaatagaattcaaagaactcaaatttacctcaagatatttaaatggttgac
tcttctcaaatagagcaaaagctttcagaaaatattattccttaggttcctttaactaca
atctaacaaggcaatgtaagaaatgaaattgtaggaaatttaactgctgaagacttggaa
aacttcgaagaattagaaagacaatatctcagttcattaaataaatga |
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