Tetrahymena thermophila: TTHERM_00726300
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Entry
TTHERM_00726300 CDS
T01020
Name
(RefSeq) phage head-tail adaptor family protein, putative
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tet
Tetrahymena thermophila
Pathway
tet03013
Nucleocytoplasmic transport
tet03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TTHERM_00726300
03015 mRNA surveillance pathway
TTHERM_00726300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tet03019
]
TTHERM_00726300
Enzymes [BR:
tet01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TTHERM_00726300
5.6.2.5 RNA 5'-3' helicase
TTHERM_00726300
Messenger RNA biogenesis [BR:
tet03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
TTHERM_00726300
mRNA cycle factors
Common to processing body (P body) and stress granule
TTHERM_00726300
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_12
UPF1_Zn_bind
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
DEAD
SLFN-g3_helicase
NPHP3_N
nSTAND3
Viral_helicase1
UvrD-helicase
AAA_16
Ig_mannosidase
Helicase_RecD
RNA_helicase
AAA_22
AAA_25
AAA
PhoH
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
7838624
NCBI-ProteinID:
XP_001027152
TGD:
TTHERM_00726300
UniProt:
Q24GG1
LinkDB
All DBs
AA seq
1081 aa
AA seq
DB search
MSQNKQKRKVDSSSEGEESEDDSTEQNQDNESTQQGGENEDEVFDIDFKNLPSHACEYCG
VHNKNSVIKCLNKDCNKWFCNGKQQGQGASHIIMHLVKSKHKEIQVHPENQNSDTTIECY
ICENKNIYLLGLVHLKNQEDQGLIICRQPCLNLKKYNEMQWEIEKWNPLIDEKMIVSWLA
SPPSAKQMEKGFKVSQKQIYEYEEQIKTNPNFKLAQGAAQSQVKKLKPVLLRYKTGKQYF
QTFYNLIEAEANYDKALKENLHYNSITVKWDISLKSRKVAQFVLPQGEDNEFNLLSGSEL
KITYKKNKKDEEWSAKGTITKVGNNDEVFVELSHNVKDTPPSGKGYTIEFVWKHTAVKRI
KKGIKKFWQDEKCISSFLYFQILGHQNEEQQTPTLDIQLPKHYSLPKMPELNYYQVEAVK
KALQQPLCLIQGPPGTGKTFTSTAIIYHLVKNIQKSGQRGQVLVCAPSNIVVDQLAERIH
QAGIKVVRMCSRSREMISSSVEFLTLHNQVRSLDFDEYKEMQKLLELKEDQGELDHDDED
KYYSLKRQGEKEILRNAEVICSTCISSADPRLKDIRFKHVLIDEATQAIEPECLLPMLKG
AKHVILVGDHRQLGPVVTCRDTAKAGLNKSLFERMVSMGIRPIRLQVQYRMHPDLSIFPS
NTFYEGTLQNGVTFNDRQFHGEFPWPNKNKPLMFLNSCGVEEISSSGTSYLNRQETALIE
DIVFRLIKAKVKPEQIGIITPYKGQRFYIGDYLSKNGRLNHVLYRQIEIASVDGFQGREK
DYIIISCVRSNECQGIGFLTDPRRLNVAITRARYGLIIVGNAKVLARDNLWNNLLNHMKE
NKVLVDGTLNDLRQCTLKFRQPQKYVPERSEFQDNNNDNDDARSTVSYKIDNINNFDLEL
PIGFGFRNSEFGFNKMPQTEQFRKIQKDQTLNMVKNYGTQLYNNQNNQEIFFFGQDREQN
YYDIPSQQKNNVQPNQFRNNGGFTNLNPNSNNQNDFNGRNRDDYNNQDEQAEDQEDDNYT
NGGDEIYTEKQNDYNNPIIQKSQPKDNSQNSKSTSFGGIGTFSIGAQKYSQFDLDLPDEF
K
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atgagttagaataagtaaaagagaaaagttgattcaagtagtgaaggtgaagagagtgaa
gatgattctacagaataaaattaagataatgaatccacataataaggaggagaaaatgaa
gatgaagtatttgatattgattttaaaaatttaccctcacacgcatgcgaatattgtggt
gtccataataagaatagtgttataaagtgtctaaataaagattgcaacaaatggttttgc
aatggtaaacaataaggttagggagcatctcatattattatgcatttagttaaatctaaa
cacaaagaaatttaggtacaccctgagaactaaaactcagatactactattgaatgttac
atttgtgagaataaaaatatatacttattaggtttagttcacttaaaaaattaagaagat
caaggtttgattatttgtagacaaccttgcttgaatctaaaaaagtataatgagatgtaa
tgggaaattgaaaaatggaatcctttaattgatgaaaagatgattgtttcttggttagct
tcaccaccaagcgccaagcaaatggaaaaagggtttaaagtttcttagaagcaaatttac
gagtacgaggagtaaattaaaactaaccccaattttaaattagcataaggtgctgcttaa
agttaagtcaagaaactaaaaccagtgttattgcgttataaaactggtaaatagtatttc
taaacattctacaacttaattgaagctgaggctaactatgacaaagctttaaaggaaaat
cttcattacaacagcattactgttaagtgggatatttctttaaagagtagaaaagtggct
caatttgtattgccttagggagaagataatgaattcaaccttttgagtggttctgaatta
aagatcacctacaaaaagaataagaaagatgaagaatggtctgccaagggtactataact
aaagtcggaaataatgatgaagtctttgttgaactaagtcataatgtaaaagatacccca
ccatcaggaaagggatacacaatagaatttgtatggaaacatactgctgttaagcgtatt
aaaaaaggtattaagaaattctggtaagatgaaaaatgcattagctcgttcttatacttt
taaattcttggtcattagaacgaagaacagtaaacacctactttggatatacaacttcct
aagcattattctttacccaaaatgcctgagctcaactattattaagttgaagcagttaaa
aaggctcttcaataacctctttgcttgatttaaggtcctccaggtactggtaaaactttt
acaagtacagcaatcatttaccatctagtaaagaacatttaaaagagcggatagagaggc
caggttttagtctgtgctccttctaacatcgttgtagattaactagcagaaagaatacac
taggctggtatcaaggtagttagaatgtgctctcgttctagagaaatgatttcatcatca
gtagaattcttaactttgcacaatcaagtaagaagtttagatttcgatgaatacaaagaa
atgtaaaagttactcgagcttaaagaagattaaggtgagttagaccatgatgatgaagac
aaatattatagtttaaaaagataaggtgaaaaggaaattttgagaaatgcggaagttatt
tgttcgacttgtatatcatcagcagacccaagattgaaggatattagattcaagcatgtt
ctaattgatgaagctacataagctattgaaccagaatgtttgttacctatgttgaaagga
gctaagcatgtcattttagtaggagatcatagataattgggtcctgttgttacttgcaga
gatactgcaaaggctggtttgaataaaagtctttttgaaagaatggttagtatgggtatt
agaccaattagattgtaagtttagtacagaatgcatcctgatctctctattttcccttca
aatactttctatgaaggaactttgtaaaatggtgtaactttcaacgatagacaattccat
ggtgaattcccgtggcctaataaaaataaacctttgatgtttttaaattcctgtggtgtt
gaagaaatatcttcaagtggtaccagttacttaaatagataagaaactgccttaattgaa
gatattgtattcagattaataaaagctaaggtaaaacctgaataaataggtatcatcact
ccttataaaggttaaagattctatattggcgattacttaagtaagaacggacgtttgaac
catgtcttatatagataaatagaaattgcctctgttgatggattttaaggaagagaaaaa
gattatataattatttcttgtgtaagaagcaatgagtgctaaggtattggttttttaaca
gacccacgtcgtcttaacgtagctattacaagagctagatacggacttattattgtcggt
aatgctaaggtacttgcaagagataatctttggaacaatcttctcaatcatatgaaagaa
aacaaggttttggttgatggaacactaaatgatctaagacaatgcacattaaagttcaga
taacctcaaaaatatgtacctgaaagatcagaattttaagataacaataatgacaatgat
gatgccaggtcaacagttagttacaaaatagataacataaacaactttgatcttgagttg
cctattggatttggatttagaaacagtgagtttggatttaacaaaatgccctaaacagaa
tagttcagaaagattcaaaaagattaaactctcaatatggtaaagaattatggaacttag
ctttacaataactagaataattaagagattttcttctttggttaggacagagaataaaac
tattatgatattccaagctaacaaaaaaataatgttcagcctaattagtttagaaacaat
ggaggctttactaatttgaatccaaattctaataattagaatgatttcaatggaagaaat
agagatgactacaataattaagatgaataagctgaagatcaagaagatgataactataca
aatggtggtgatgaaatttacacagaaaagcaaaacgattacaacaatccaataatctag
aagtcataaccaaaagataactcctagaacagcaaatcaacttcttttggaggtatcggt
acattcagtataggtgcttagaaatatagttagtttgatttagatttacctgatgaattt
aaatga
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integrated database retrieval system
