KEGG   Tetrahymena thermophila: TTHERM_00787270
Entry
TTHERM_00787270   CDS       T01020                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
tet  Tetrahymena thermophila
Pathway
tet03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tet00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TTHERM_00787270
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tet03041]
    TTHERM_00787270
Spliceosome [BR:tet03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    TTHERM_00787270
 Complex C
   U5 SnRNP specific factors
    TTHERM_00787270
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 Beta-prop_CAF1B_HIR1 EIF3I WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_TEP1_C WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_RIG_2nd NBCH_WD40 WD40_RFWD3 Beta-prop_IFT122_1st Beta-prop_SPT8 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N WD_LRWD1 Beta-prop_IFT140_1st Ge1_WD40 VPS8_N
Other DBs
NCBI-GeneID: 7831211
NCBI-ProteinID: XP_001022166
TGD: TTHERM_00787270
UniProt: Q23ZD6
LinkDB
AA seq 371 aa
MDLGSASILPRFRNEGDKKFSSTQFIQSHVPHLLSENNQQLMVVDNNNESAMQEENKPVT
KKLFTPNVQLTGHVSEVLCVKFSPCGDYLATAGFDKQILLWDIYNNCKNFGVLKNHTNAI
LDLHFSADGQKLYSASADKSVNVWDFNQMKSIKKLKGQENTSFVNTCHPARRGPDMLVSG
SDDGCVMLWDLRQKAPAQVIPSKIPVTSVSFNDTADKIFIAGVDNDVKVLDLRKKIIDYV
LFGHTDTITGISLSHDGSYLLTNSMDQTVRCFDVRPHVTNNRCVKIFQGNRHSHERNLLR
VSWNPDGDYCTAGSSDKFLYIWDTATKQIVQRLGGHNGSVNDVQFSPTDNLIASASSDKT
VIIGELPQFKI
NT seq 1116 nt   +upstreamnt  +downstreamnt
atggatttaggaagtgcaagcattttaccaagatttaggaatgaaggggataaaaaattt
tcatccacttaatttatttagtctcatgttccccatttattaagcgagaataattaatag
ttaatggttgttgataataataatgaatcagctatgcaagaagaaaataagccagttaca
aaaaaactatttactcctaatgtttaattaacaggtcacgtttcagaagtattgtgcgtt
aaattttcaccttgcggtgactatcttgcaactgcaggcttcgataagcaaattcttctt
tgggatatatataataattgtaaaaatttcggagtacttaaaaatcacacaaatgcaatt
ttagatttgcacttttcagcagatggataaaaactttatagtgcttctgcagataaaagt
gttaatgtttgggactttaattaaatgaaaagtattaagaaattaaaaggacaggaaaat
actagctttgtaaacacctgtcatcctgcaagaagaggaccagatatgcttgtctctggt
agtgatgatggttgtgtaatgctttgggatttaagataaaaagctcctgcttaagttatt
cctagcaaaattccagttacttcagttagttttaatgatactgcagataagatttttata
gcaggagttgataatgatgtcaaagttttagatttaagaaaaaagattattgattacgtg
ttatttggtcacacagataccatcacaggtatttctttgagtcacgatggaagctatctt
ctaacaaactctatggatcaaacagtcagatgttttgatgttagacctcatgtcacaaat
aatagatgtgttaaaattttttagggaaatagacactcacatgaaagaaatttattaaga
gttagttggaatcctgatggtgattactgcactgcaggatcttccgataaatttttatat
atttgggatacagcaactaagtaaattgtacaaagactaggtggacataatggatctgta
aacgatgtttaatttagtcctacagataatttaatagcaagtgcttctagcgataaaact
gttataataggggaattaccatagtttaagatatga

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