Tetrahymena thermophila: TTHERM_01122740
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Entry
TTHERM_01122740 CDS
T01020
Name
(RefSeq) 3'-5' exonuclease
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
tet
Tetrahymena thermophila
Pathway
tet03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tet00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TTHERM_01122740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tet03019
]
TTHERM_01122740
Messenger RNA biogenesis [BR:
tet03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
TTHERM_01122740
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
7835788
NCBI-ProteinID:
XP_001019575
TGD:
TTHERM_01122740
UniProt:
Q23S17
LinkDB
All DBs
AA seq
881 aa
AA seq
DB search
MASNNKIKDLDEILNQKDFMKQVLQKDASLVRLSNSLPQNDEMKFYMNNEQLKQKQKAIN
VKILHQLKKIASFIQFEQASSIDLNHFSHIIDMNDLLFENIDTSLDKIKKINNVTESSLF
DPSKTISSDKGFKPISGEESEDIITIATKEKPQNHFKDCIDNSIEHPFIPVIKEKLNADV
PLDDVIVQVQREGAESFFKTIQDPLQYEFPHPYAYEIENFNFSEQQLQTDNIIVQEPISL
KEELVFVDKEDILDEMIESLKQCSEVAIDLEHHSYRSFNGITCLMQISSRTKDYIVDVFS
VWKSLHKLNAVTTDKNIVKVLHGADMDIQWLQRDFGIYIVNLFDTGQAARTLSMPSYALA
YLLQSISKVPTDKKYQLADWRIRPLPREMISYARSDTHYLLSIYDNLRIQLVSKALQQGQ
NASHFIESVLNKSRAICLKKYVKPILDDEKYHSILQNQRIILSDRKFRILKRLLEWRYKM
AAKYDENPTFVLANDILFNIVNRLPQTQKEFASSNLKLSYVCQYHANEILSIIKEEIESE
QKSKSGESESATKNQSEMETEDLIYASRNHNNNISGYQIINTQSHQMEQELEDEEVSFKF
EVIDVQIGVYQGNLNILEDHILSSSTSAEIQSKIDKINSSFFYADPVDFYCEKYPFMREA
YELAKLQEEEIMKKRNDLAYIQSKNPFEGENEGQTNKEEEERDIYLAFDKEKGPSSKPKE
VEQINVPDLPQSYEDQFKTSLKKRKYNFGNEAKRNNNQDEEGEEDNENGEKIYKKRSTGQ
KSTFDMLIEQGLREQTDSEESDSEEGEQQQKKKKREVTEEEKKQIEDNFNQFADKIRNRI
NKDPKFKSGINAQKKFNSSNNKKGGNKKNNKFISKFNKSGF
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggctagcaataataaaattaaggatttagatgaaattcttaactaaaaggatttcatg
aagtaggttttgtagaaagatgcaagtcttgttcgtttgagtaactctcttccataaaat
gatgaaatgaagttttacatgaacaatgagcaactaaaataaaagcaaaaggctatcaat
gttaaaattctccaccagttaaagaaaatagcatcatttatataatttgagcaagcttct
agcattgacttaaaccattttagccatatcatagacatgaatgatctactttttgagaat
atcgacacttcattggacaaaattaaaaaaattaataatgtcactgagtcttctcttttc
gatccttctaagactatatcctctgacaagggcttcaagcctattagtggggaggaatcc
gaagacataatcacaatagcaacaaaagaaaaaccttaaaaccattttaaagattgcatt
gataattcaatagaacatcctttcattcctgtcatcaaagaaaagctaaatgcagatgtt
ccattagatgatgtcatagtttaagtatagagagagggagctgaaagcttttttaaaacc
atttaagaccctttataatatgaatttccccacccttatgcttatgaaattgagaatttc
aatttctcagagtaacaattacagacagataatataatagtttaggagcctattagtctt
aaagaggagttagtgtttgtagataaagaagatattttagacgaaatgatagagtctctg
aagtaatgtagcgaagtagctattgatttagaacaccattcatatcgttcattcaacggt
attacttgcttgatgcagatttctagcagaactaaagactacattgtggatgtcttcagt
gtatggaaatctctacataagcttaatgcagttactacagataaaaatattgttaaagtt
cttcatggtgcagatatggatattcaatggttacaaagagattttggaatttatattgtt
aatttattcgataccggataagcagccagaactttatctatgcccagctatgcattagct
tatcttttataatctatttcaaaagtacccacagataaaaagtaccaattagctgattgg
agaatccgtcctctcccaagagaaatgataagttatgctagatcagatacacactatttg
ttatcaatttatgacaatttaagaattcaacttgtaagcaaagcactttagtaaggataa
aatgcttctcactttattgagagtgttctgaataagtctagagctatttgcctcaaaaag
tatgtcaagccaattttagatgatgaaaaatatcactcaattttacaaaattaacgtatc
atcttatctgacagaaagttccgcattttaaaaagactcctcgaatggagatataaaatg
gctgctaaatatgatgaaaatcctacctttgttttagctaatgatattcttttcaatatt
gtaaatagactaccctaaactcagaaagagtttgcatcttcaaatcttaagcttagttac
gtatgccaatatcatgcaaacgaaattctttctattattaaggaagaaattgaatctgaa
caaaagtctaaatctggagaatcagagagtgccaccaaaaattaaagtgaaatggaaact
gaagatctgatttatgcctctcgtaaccataataataacatatcaggatactaaataatt
aacactcagagtcaccaaatggagtaggagcttgaagatgaagaggtttccttcaaattt
gaagtaattgatgtataaattggggtgtattaaggcaatttgaatattttagaagaccac
atactatcatcttcaacctctgctgaaatataatcaaaaatagataaaattaattcttct
ttcttctatgcagatcctgtagatttttattgcgaaaaatacccttttatgagagaagct
tatgaactcgctaaattgcaagaagaagaaattatgaaaaaaagaaatgacctggcctac
atttagagtaaaaacccatttgaaggtgaaaacgaaggacaaactaacaaggaagaagaa
gaaagagatatttatttagcatttgataaggaaaaaggaccttcttctaaaccaaaagaa
gttgaacaaataaatgtgcctgatttacctcaatcttatgaagattagtttaaaacaagt
ctcaaaaagagaaaatataattttggcaatgaagcaaaaagaaacaacaactaagatgaa
gagggagaagaagataatgaaaatggagaaaaaatttacaaaaaaagatctactggataa
aaaagtacattcgatatgttaatagagtaaggtctcagagaacaaactgactctgaagaa
tcagattctgaagaaggtgaataatagtagaagaagaaaaaaagagaggttacagaagaa
gaaaaaaaacaaatcgaagataattttaaccagtttgcagataaaataagaaatagaatc
aataaagatcctaagtttaaatctggtatcaatgcataaaaaaaattcaacagtagcaat
aataaaaagggtggtaataaaaaaaataataagtttataagcaagttcaacaaaagcgga
ttttga
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