Tetragenococcus halophilus YJ1: GLW17_02830
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Entry
GLW17_02830 CDS
T06306
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
tey
Tetragenococcus halophilus YJ1
Pathway
tey03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tey00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GLW17_02830 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tey03019
]
GLW17_02830 (rnr)
03016 Transfer RNA biogenesis [BR:
tey03016
]
GLW17_02830 (rnr)
Enzymes [BR:
tey01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GLW17_02830 (rnr)
Messenger RNA biogenesis [BR:
tey03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GLW17_02830 (rnr)
Transfer RNA biogenesis [BR:
tey03016
]
Prokaryotic type
tRNA degradation factors
GLW17_02830 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
S1_RRP5
DUF8139
CcmE
Motif
Other DBs
NCBI-ProteinID:
QGP75849
UniProt:
A0AB37D376
LinkDB
All DBs
Position
complement(628980..631298)
Genome browser
AA seq
772 aa
AA seq
DB search
MKETIKTKVLHFMENSSKKSFSMEEIAENLGLGKSDDFKALVQTVATMEREQFVVFNKKG
KIKLPPKQVLVEGTFRANERGFGFVTIDPEEDDVYIAKENTAYAMDGDLVAIDITKLSDP
ADELGAEGRIVEVRQRNLTQIVGEFHLFSEDEIADTDLYGVISPKDKKLSGFKVFISATG
IRPVEGNIVIAEITHYPEKGYEDSLEGIVKNIIGHKDEPGMDILTVLAAHDVPTEFPEEV
IEQAEQVPDSIDPKDYPDRKDRQDQMIVTIDSEEAKDLDDAVSVKKLENGHFFLAVHIAD
VSYYVTENSPLDKEALKRGTSVYLTDRVVPMLPQRLSNGICSLNPQVPRLAMSCEMEIDE
QGSVVSYDIFPSVIKTSERMSYTAVNEILEDENPETMARYKELVPMFQAMKELHECLETM
RDKRGALTFEDNEAQVVVDENGHPLDIILRQRGIGERIIESFMLCANETIAKHYQQANLP
FIYRIHEEPKEEKLQQFFDFAATLGILVKSKKGSISPKDLQKVVEDAAERPESKVINTML
LRSMQQARYSEENVGHYGLAAEHYTHFTSPIRRYPDLLVHRLIRSYSEDKSEKKQEKWAE
KIPEIAQHSSDMERRAVECERDVDSMKKAEFMQDHIDEEFEGVISSVVKFGFFVELPNTI
EGLIHVSELQNDYFQFVESQLALVGEHTNQTFKIGQQVKVRVTKADPDTREVDFELVDAQ
EVTPVQTNKQQNHKQARKNKEGTSRRKKSKKTKNKGKKPFYKDVPKKTKKKK
NT seq
2319 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagacgataaaaactaaggttttgcattttatggaaaatagttctaaaaaaagt
ttttccatggaagaaattgcagaaaacctaggattaggtaaaagcgatgatttcaaagct
ttagtgcaaaccgtagcaacaatggaaagagaacaattcgttgttttcaataaaaaagga
aaaataaaattgccgcccaagcaggtactagtggaaggaacattccgagcgaatgagcgt
ggttttggttttgtgacgattgatccagaagaagatgacgtttatatcgctaaagaaaac
actgcttatgctatggatggggatttggtggctattgatattactaaactgtcagatcct
gctgatgaactgggagctgaaggtcgtattgtggaagtacgtcaaagaaatctcacacaa
atcgttggagagttccatttgttttctgaagatgaaattgcagatactgatttgtatggg
gtaatttcacctaaagataaaaaactttccggttttaaagtatttatttccgctacaggc
atccgtccggtagaaggaaatattgtgattgctgagatcactcattatcctgaaaaaggt
tatgaagatagtttagagggaatcgtaaaaaatattatcggtcataaagatgagccagga
atggatattctaacagttttagcagctcatgatgtgcctacagaatttcctgaagaagtc
attgagcaagctgaacaagttcctgactcgattgatcctaaagattatcctgaccgaaaa
gatagacaggatcaaatgattgtaacgattgatagtgaagaagccaaagatttggatgat
gcagtttcagtgaaaaaattagaaaatggacatttctttttagctgtgcatatcgcagat
gtttcttactatgttactgaaaatagtccattagataaagaagccttaaaacgtggtaca
agtgtttatctaactgatcgtgttgttcctatgctgccgcaacgcttgtctaatggaatt
tgttcgttaaatcctcaagtcccacgacttgccatgagttgtgagatggaaattgatgaa
caaggaagtgtcgtttcttatgatatatttccaagtgtcattaaaaccagtgaacgtatg
tcttacacggcggttaatgaaattttggaagatgaaaatccagaaacgatggcgcgctat
aaagaacttgtaccgatgtttcaagcgatgaaagaattacatgaatgtttagaaacgatg
cgtgataaacgaggagctttaacctttgaagataacgaagcacaagtcgttgttgatgaa
aatggccatcctctagatattattttaaggcaaagaggcataggtgaacgtattattgag
tcctttatgctttgtgccaatgaaacgatcgctaaacattatcaacaagcaaatttacct
tttatttatcgtattcatgaagagccaaaagaagaaaagctgcagcagttttttgatttt
gcagcgactttaggaattttagttaagagtaaaaagggttcgatcagccctaaagattta
caaaaggtagtggaagatgcggctgaaagaccagaaagtaaagttattaatacgatgttg
ttacgtagtatgcaacaagcacgttattcagaagaaaatgtaggtcactacggtttagca
gcagaacattatacacattttacttctcctattcgtcgttatcctgatttgttggttcat
cgtttgattcgttcatacagtgaagataaatcagaaaagaaacaagagaaatgggcggaa
aaaattcctgagatcgcacagcatagctctgatatggagcgacgtgctgtagagtgtgaa
cgcgatgttgattcgatgaaaaaagcagaatttatgcaagatcatattgatgaagaattt
gaaggtgtcattagttccgttgttaaatttggtttttttgttgaattacctaataccata
gaaggcttgattcatgtaagtgaattacaaaacgattattttcaatttgttgaaagtcag
cttgctttggttggagaacacacaaaccaaacctttaaaatcggtcaacaagtaaaggta
cgggtgacaaaggcagatcctgatactagagaagtggattttgaattggtagatgcgcaa
gaagttacgcccgttcaaacgaataaacaacaaaatcataaacaagctaggaaaaataag
gaaggtacaagcagaaggaaaaaaagtaaaaaaactaaaaataaaggaaagaagccattc
tataaagatgttccaaaaaagacaaagaaaaagaaataa
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