Tetragenococcus halophilus YJ1: GLW17_06420
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Entry
GLW17_06420 CDS
T06306
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tey
Tetragenococcus halophilus YJ1
Pathway
tey03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tey00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
GLW17_06420 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tey03021
]
GLW17_06420 (rpoC)
03400 DNA repair and recombination proteins [BR:
tey03400
]
GLW17_06420 (rpoC)
Enzymes [BR:
tey01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
GLW17_06420 (rpoC)
Transcription machinery [BR:
tey03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
GLW17_06420 (rpoC)
DNA repair and recombination proteins [BR:
tey03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
GLW17_06420 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
PRC
Motif
Other DBs
NCBI-ProteinID:
QGP76488
UniProt:
A0AB37D2Q9
LinkDB
All DBs
Position
complement(1373698..1377351)
Genome browser
AA seq
1217 aa
AA seq
DB search
MIDVNKFENMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFDERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYAVIDPGNTSLEKKQLLTEREYREKREQYGQEFNAAMGADAIRQLLE
SVDLDSEADELKETLKTASGQKRTRAIRRLDILEAFRTSGNEPSWMVMDVVPIVPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPNIIVQNEKRMLQEAVDALIDNGR
RGRPVAGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVICVGPFLKMYQCGLPKE
MAIELFKPFVMRELVKRELASNVKNAKRKIERQEDDVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIRLHPLACEAYNADFDGDQMAVHVPLSEEAQAEARVMMLAAQHIL
NPKDGKPVVTPSQDMVLGNYYLTLEEAEREGEGMILRDMNEAVTAWKNGYVHLHSRVAVD
PERLGGKPLTDFQKGRLMVTTVGKIIFNTIMPAEFPYLNEPTDFNLTVQTPDKYFIDAGT
DIPAYIKEQDLIEPFKKDNLEDIIAEVFKRFKVTETSRMLDRMKDLGYSHSTHAGITVGI
ADITVLQEKEELINEAHKQVATVSKQFRRGLITDDERYERVIDIWNEAKDNIQLKLSKSL
GNQNPIYMMSDSGARGNISNFTQLAGMRGLMAAPSGQIMELPIISNFREGLTVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREDDCGTDRGLEIEAIREGNEIIEPLE
ERLVGRYTSKAVYHPETGEVIVEANDLINEVEAKQIVNAGIEKVTIRSAFTCNSKHGVCR
LCYGRNLATGNEVEVGEAVGTVAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGEAVVTEVTGEVTEVAEDAATRTKEVTVTGETDTRTYTVPYTARMKISEGDYIH
RGAPLTEGSIDPKHLLQVRDVLSVENYLLREVQRVYRMQGVEISDKHVEVMVRQMLRKVR
VMDPGDTDILPGTMMDIADFRDQNYNVLVTGGIPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKQDPLLGLKENVIIGKTIPAGTGMPRYRNMEPKEVNTASENVYSIS
DIEAQMAAEDALNETQS
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgatgtaaataaattcgaaaatatgcaaataggcttggcttctcccgaaaaaatt
agaagctggtcttatggcgaagtcaaaaaacctgagaccattaactatcgtacgttaaaa
cctgaacgtgagggtttatttgatgagcgtattttcggtcctacaaaagactgggaatgt
gcttgtggaaagtacaagcgaatccgttataagggtattgtttgcgatcgttgtggggta
gaagtaacacgttcaaaagttcgtcgtgaacgaatgggacatattgaactagctgctcct
gtatctcatatctggtactttaaaggtatcccatctcgtatggggcttgttttagacatg
agtccacgcgcattagaagaaattatctattttgcttcttatgctgttattgacccaggt
aataccagcttagaaaagaaacaattgttgactgagcgtgaatatcgtgaaaaacgcgaa
caatatggacaagaatttaacgctgcaatgggtgctgatgcgatcagacaactattggaa
agcgtagatttagatagtgaagcagatgaactaaaagaaaccttgaaaactgcttcgggt
caaaaaaggacaagagctattcgccgtttggatatcttggaagctttccgtacgtctgga
aatgaaccaagctggatggtaatggacgttgtcccaattgtaccgccagatttacgacca
atggtacaattagaaggtggacgttttgctacttctgatttaaacgatttatatcgtcgt
gttattaaccgtaataaccgattgaaacgtttgttggatttaaacgcacctaatattatt
gttcaaaatgaaaaacgtatgttgcaagaagcagttgacgctttgatcgataatggtcgt
cgtggtcgtcctgttgcaggaccaggaaatcgtccgttgaagtctctttctcatatgcta
aagggaaaacaaggacgcttccgtcaaaacctattaggtaaacgggtagactattctgga
cgttcagttatctgtgttggaccatttttgaaaatgtatcaatgtggattgccaaaagaa
atggcaatagaattatttaagccatttgttatgagagaattagttaaacgtgaattagct
tctaacgtaaaaaatgctaaacgtaaaattgaaagacaagaagacgatgtgtgggacgta
ttagaagatgttattaaagagcatcctgtactattaaaccgcgcacctacgcttcaccgt
ctaggtattcaagcttttgaacctgtattagtagaaggacgcgctattcgtttgcatcct
ctagcttgtgaagcttacaatgctgactttgacggggaccaaatggctgttcacgtacct
ctaagtgaagaagcccaagctgaagctcgagtaatgatgttagctgctcaacatattttg
aatccaaaagatggaaaaccagttgttacgccatcacaagacatggttttagggaactac
tacttaacattagaagaagcagaacgcgaaggagaaggtatgattcttcgtgacatgaac
gaagcagtcactgcttggaaaaatggctacgttcatttgcattctcgtgtagcagttgat
cctgaacgtttaggtggtaagccattgacagacttccaaaaaggtcgtttgatggtgaca
actgttggtaaaattatctttaataccattatgccagcagaatttccttacttgaatgaa
ccaactgattttaatttaactgtgcaaacgccggataaatacttcattgatgctggaaca
gatattcctgcttacattaaagagcaagatttgatagaaccattcaaaaaagataatttg
gaagatattatcgctgaagtctttaaacggtttaaggtaaccgaaacttcacgtatgctt
gaccgcatgaaagacctaggttatagtcactccactcatgctggtattacggttggtatt
gctgatattactgttttacaagaaaaagaagaacttattaatgaggcgcacaaacaagtt
gctactgtttcaaaacagttccgtcgtggtttgattactgatgatgaacgttatgaacga
gtgattgatatttggaatgaagccaaagataatattcaattgaaattgtcgaaatctctt
gggaatcaaaacccaatttatatgatgtctgactcaggtgcccgcgggaatatctctaac
tttacccaacttgctgggatgcgtggtttgatggcagctccaagtggtcagatcatggaa
ttaccaattatttctaatttccgtgaaggcttgactgttttggaaatgtttatttctact
cacggtgcacgtaaaggtatgactgatacagccttgaagactgcggactcaggttacttg
acacgtcgtttagtggatgtagcacaagacgtgattgttcgagaagacgactgtggaaca
gatcgtggcctggaaatcgaagcgattagagaaggtaacgaaattattgagcctttggaa
gaacgtctcgtaggtcgttatacaagtaaagctgtttaccatcctgaaacaggggaagta
attgtcgaagctaatgacttaattaatgaagttgaagcgaaacaaattgtaaatgctggt
attgaaaaagtaacgattcgttcagcgtttacttgtaatagtaagcatggcgtttgtcgt
ctttgctatggacgtaacttggctactggtaatgaagtagaagttggtgaagccgtaggt
actgttgctgcacaatctattggtgaacctggtacccaattaaccatgcgtactttccat
acgggtggtgttgctggagatgatattactcaagggctaccacgtatacaagaaattttt
gaagcacgtaaccctaaaggggaagcagtggttactgaagtaacaggagaagttactgaa
gtggctgaagatgccgctactcgtacaaaagaagttacagtaactggcgaaacagataca
cggacttatacggtaccatatactgcacgtatgaaaatttctgaaggagattacatccat
cgtggagcaccgttaacagaaggttctatcgatcctaaacacttattgcaagtgcgtgat
gtactttctgtagaaaattatctattacgtgaagtacaacgtgtttatcgtatgcaaggg
gtagaaattagtgacaagcacgttgaagttatggtccgtcaaatgttgcgcaaggttcgt
gtcatggatccaggagatacagacattctacctggtactatgatggatattgcagacttt
agagatcaaaattataatgtcttagttactggtggcattcctgcaacttctcgtccagta
ctccttggtattacgaaggcttctctggaaactaacagcttcttatcagctgcttccttc
caagaaacgactcgtgtgctaacagatgctgcaattcgcggtaaacaagatccacttctt
ggtctaaaagaaaatgttattattggtaagactatcccagctggtaccgggatgcctcgt
taccgtaatatggaacctaaagaagtaaatacagctagcgaaaatgtttatagtatttct
gatattgaagcacaaatggctgcagaagatgcattaaatgaaacacaaagctaa
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integrated database retrieval system
