Tachysurus fulvidraco (yellow catfish): 113634358
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Entry
113634358 CDS
T08119
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03030
DNA replication
tfd03410
Base excision repair
tfd03420
Nucleotide excision repair
tfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
113634358 (lig1)
03410 Base excision repair
113634358 (lig1)
03420 Nucleotide excision repair
113634358 (lig1)
03430 Mismatch repair
113634358 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tfd03032
]
113634358 (lig1)
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113634358 (lig1)
Enzymes [BR:
tfd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
113634358 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
113634358 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
113634358 (lig1)
DNA replication proteins [BR:
tfd03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
113634358 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
113634358 (lig1)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
113634358 (lig1)
NER (nucleotide excision repair)
Other NER factors
113634358 (lig1)
MMR (mismatch excision repair)
Other MMR factors
113634358 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
113634358
NCBI-ProteinID:
XP_047662549
LinkDB
All DBs
Position
22:10667683..10688099
Genome browser
AA seq
969 aa
AA seq
DB search
MQRSISSFFQPKKFKEKEGLPTGSSESVKSPLRSKNIDPESESPVKMSKRSRAIIDSDDE
EQQTLKDVSKQNGKQAATPVSHVKEMTSLPSAKPVVTMTTSVVSGTSDTLEMPVTPNSTS
PSGIPKRKTARKQFPKRKLDSRSDGEREKEEDGKETEGGQESKRAKTETALEKMVTDEEA
VEVEEKNSNTMKKVLKAKDEEKMNVTNAEKQNQRQSDENEQEGEKQEANGLKKYTKEEKG
SPERVMEKDAAAEKIGGAAKKKAINSFFAPRKPAVKLEKSEEKSDVQKIDGEKPAAVTVS
DKKENNGDKNMELANQRQYDPSKAHYHPIDDACWNKRQRVPYLAVARTFEKIEEDSGRLR
NIETLSNFLRSVILLSPDDLLCCVYLCQNQLGPAHQGLELGVGETVLMKAVAQATGRQLD
KIKTEAQEKGDLGLVAESSRSNQRMMFAPANLTAMGVFSKLKEIGNMSGNSAMNKKIDII
KGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLSPPGQEFPPAMTDAGKRM
SAESRRAWLEEKGLLLKQTYCEMPNYDAIIPVLLKFGIDELPNHCRLTPGVPLRPMLAHP
TKGVGEVMKRFDEAAFTCEYKYDGERAQIHILESGEVYVFSRNQEDNTSKYPDIISRIPQ
IKQKSVLSCVLDSEVVAWDREKKQIQPFQVLTTRKRKDVEASEIKVQVCVYAFDLLYLNG
ESLVREPFIKRRALLRQSFMEKEGEFVFACSLDSDNTESIAEFLEQSIRDSCEGLMVKTL
EKDATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAGSYGGFLLGCYDEEN
EEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQTAEPDVWLDAVQVWEVKCA
DLSLSPVYKAAMGLVDPDKGISLRFPRFLRIRDDKKPEDATTGAQIADLYRKQQQIQNQG
EKADLEDYY
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgcaacgaagtatatcgtccttctttcagccaaagaagtttaaggagaaggagggcctg
ccaacagggagctctgagtcagttaaaagccccctcaggtcaaagaacattgatccggaa
agtgagtcaccagtgaagatgagtaagcggagccgagcaatcatagacagtgatgatgaa
gagcagcagactttaaaagatgtctccaaacagaatggaaagcaagcagccacaccagtt
agccatgttaaggagatgaccagtctgccctctgcaaagcccgttgttaccatgacgacc
tctgttgtttcgggaacttctgacacacttgaaatgcctgttaccccaaattccacttca
ccctctggcatcccaaaacgcaaaactgcccgtaagcagtttcccaagagaaaattggat
agcaggagtgatggagagagagaaaaagaagaggatggaaaagagactgagggaggacag
gagagtaaacgagcaaaaacggaaacagctcttgaaaaaatggtgactgatgaagaggct
gtggaggtggaggaaaagaacagcaatacaatgaagaaagtgcttaaagcaaaggatgag
gaaaaaatgaatgtgactaatgctgagaaacaaaatcaaagacagagtgatgaaaatgaa
caggaaggagagaagcaagaggcgaatggattgaaaaagtatacaaaggaggaaaaaggc
agtcctgaaagagtgatggagaaggatgctgcggctgagaagatagggggagctgctaag
aagaaagccatcaacagtttctttgcacccagaaaacctgcagtaaagctggaaaaatcg
gaagagaaaagcgatgtacagaagatcgatggtgaaaagcctgcagctgtgactgtttct
gataagaaagaaaataacggtgataagaatatggaacttgcaaaccagagacaatatgat
ccttctaaagctcactatcatcccattgatgatgcttgctggaataagaggcagagagtt
ccatatcttgctgttgctcggacatttgagaaaattgaagaagattctggcaggttgaga
aacattgagactctgtccaactttttgcgctctgttatcctgctctctccagatgacctc
ttatgctgtgtgtacctatgtcaaaatcagcttggtcccgcacaccaggggctagagcta
ggtgtgggggaaacggtactgatgaaggctgttgcccaggcaactgggcgtcagctggac
aaaatcaagactgaggcccaagaaaaaggtgacctgggattggtagctgagagttcccgt
agtaatcagagaatgatgtttgcaccagcaaatctgactgctatgggcgtgtttagtaaa
ctgaaggagattggcaacatgagcggaaactctgcaatgaataagaaaattgacataatt
aagggtctgtttgtggcttgtcgtttctcagaggctagatacattgtacggtcattagca
ggcaaattgaggattggattggctgagcagagtgttttagcagctctaagtcaagcagta
tgtctaagtccaccaggtcaagaattcccgccagctatgactgatgcaggaaagaggatg
agtgcagagagcaggagagcatggcttgaggaaaaaggtctcctccttaagcagacttac
tgtgaaatgccaaattatgatgccattattcctgtcttgttgaagttcggcatagatgaa
ctgcccaatcactgcagacttactccaggtgtgccactgcgccccatgttagctcatcca
actaagggagtaggggaggtgatgaaaaggtttgatgaggcggctttcacttgtgaatac
aagtatgatggcgagagagcacagattcacatccttgagagtggtgaggtttatgttttt
agccgaaaccaagaggacaacaccagcaaataccctgacatcatttcgcggataccgcag
ataaagcagaaatctgtgcttagctgtgtcttggactctgaggtggttgcatgggacaga
gagaaaaagcagattcagccctttcaagttcttaccacacgcaaacggaaggatgtagaa
gcatctgagattaaggtgcaggtttgtgtatatgcctttgacctgctctacttaaatgga
gagtctctggtaagggagccatttattaagcgccgtgctttgttaagacagagtttcatg
gagaaggagggagagtttgtctttgcttgttctcttgactctgacaacactgaatccata
gcagagttcctggagcaatccatacgagactcttgcgaaggcttaatggtgaaaaccctg
gagaaagacgccacctatgaaattgccaagcgctctcataactggcttaagctgaagaag
gattatctggaaggtgtgggtgacacagtggatctgtgtgtgattggtgcctatctaggg
aaggggaagagagccggtagttatgggggtttcctgcttggctgctatgatgaagagaat
gaggagtttcagtctgtctgtaagataggaacaggtttcaaagatgaagatctggagcag
cattacaatttcttaaaggagcacatcctccctaagccccgcccctactacagggtggat
caaaccgccgagccggatgtttggctggatgctgtacaagtttgggaagtgaagtgtgct
gatctgtcactgtctccagtttacaaggcagcaatgggattggtggacccagacaaaggg
atttcccttcgctttccccgattccttcgcataagagatgacaaaaaaccagaagatgct
actacaggagcacagattgccgatctctacagaaagcagcagcagattcagaatcaagga
gaaaaggctgatttagaggattactactga
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