Tachysurus fulvidraco (yellow catfish): 113634457
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Entry
113634457 CDS
T08119
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113634457
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113634457
03009 Ribosome biogenesis [BR:
tfd03009
]
113634457
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113634457
Spliceosome [BR:
tfd03041
]
Complex A
U1 snRNP components
U1 related factors
113634457
Complex B
113634457
Ribosome biogenesis [BR:
tfd03009
]
Eukaryotic type
Pre-60S particles
Helicases
113634457
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113634457
NCBI-ProteinID:
XP_026989229
LinkDB
All DBs
Position
5:complement(28043842..28052467)
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AA seq
609 aa
AA seq
DB search
MPGYSDRDRGRDRGYGSSAPRFGGGRSGPPPSGKFGNPGDRLRKRHWNLDKLPKFEKNFY
KEHPDVTRRSTQEVEQYRRAKEVTVKGRDCPKPIIKFHEATFPNYVMDVINKQTWSEPTP
IQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHINHQPFLEHGDGPICLVLAPTREL
AQQVQQVAAEYGRASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNL
QRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVQ
INVGALQLSANHNILQIVDVCNDGEKDDKLIRLLEEIMSEKENKTIIFVETKRRCDELTR
RMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKACILIATDVASRGLDVEDVKFVINYDYP
NSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQANDLISVLREANQAINPKLLQMAEDRG
GRSRGGRGSYKDDRRDRYSSGGRRDFGSYRDREGDRGYSSGPKAQNGSYGGGYNKTNGSS
GNYSNNSYNSGGNPNAFGNQNFQNQPFQGNQVPAQNGMNHPPFPFNPPQPPQQPPQPMVP
YPMPPAFPQ
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgcctggatattcagacagagaccgcggaagagacagaggttatggcagcagtgctccc
cgattcggtggaggccgcagtggccctcctccatccggaaaatttggtaatcccggcgac
agactacgcaaacggcactggaaccttgacaagcttcctaaatttgagaaaaacttctat
aaagagcatcctgatgtcaccaggaggtcaacgcaagaggtagaacagtatcggcgggca
aaagaagtcacagtcaaaggcagagattgtccaaagcctattattaaatttcatgaagcc
accttcccaaattatgtaatggacgtaatcaataagcagacatggtctgagcccactccc
attcaagctcaagggtggccactagctctaagcggaaaagacatggtcggcatcgcccag
acaggctctggaaaaaccttggcctacctgttaccagccattgtgcacattaaccaccag
ccgttcctcgagcacggagatgggccgatttgcctggtgcttgcccccactcgtgagctg
gctcagcaggtgcagcaagttgctgcagagtatggacgagcctctcgcctaaagtccacc
tgcatctacggaggagctcctaaaggaccccagattcgagaccttgagagaggtgttgag
atctgcattgccacacctggtcgtctgatcgacttcctggaggcaggaaagaccaacctg
caacgctgcacttacctggtgcttgacgaggctgaccgcatgctggacatgggcttcgaa
ccacagatccgaaaaattgtagatcagatccgtcctgacaggcagacactgatgtggagc
gccacttggcccaaagaggtgcgtcaactggcagaagatttcctgaaggagtacgttcaa
atcaatgttggagctctgcagctcagtgccaatcacaacatcctgcaaattgttgatgtc
tgtaatgatggagaaaaggatgacaaactaatccgcttgctagaggagatcatgagtgag
aaggagaataagaccatcatctttgtagagaccaaacgacggtgtgatgaactaacccgg
aggatgaggagagacggatggcctgccatgggaattcatggagataaaagtcagcaggag
cgagactgggtcctgaacgagttcaagtatggtaaagcatgcatcctcatcgcgacagat
gtggcctctcgtggattagatgtggaggatgtgaaatttgtcatcaattatgactaccct
aactcctctgaggactatatccaccgaattggccgcacggcccgcagtcagaaaacgggc
acagcctacaccttctttacacccaacaacatgaaacaggccaacgacctgatctcggtc
ctgcgcgaggccaatcaagccatcaaccccaaactgctccagatggcagaggaccgagga
gggcgttccagaggtggccggggtagctacaaggatgaccgtcgggaccgctattccagt
gggggtaggagagattttggtagctatagggatagagaaggtgaccggggttacagtagt
ggccccaaagcacagaacggcagttatggcggcggctacaacaaaaccaacggtagcagc
ggtaactacagtaacaacagctacaacagtgggggaaacccaaatgctttcggaaaccag
aacttccagaaccagccattccaggggaaccaggtgccagcccaaaatggaatgaaccac
cctccattcccctttaacccccctcaacccccccaacagcctccacagcctatggtgccc
taccccatgcctcctgcttttccccagtag
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