Tachysurus fulvidraco (yellow catfish): 113634659
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Entry
113634659 CDS
T08119
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain
KO
K08131
collagen type IX alpha
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04510
Focal adhesion
tfd04512
ECM-receptor interaction
tfd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113634659 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
113634659 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
113634659 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tfd00535
]
113634659 (col9a2)
Proteoglycans [BR:
tfd00535
]
Extracellular matrix (ECM) proteoglycans
Others
113634659 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
113634659
NCBI-ProteinID:
XP_026989556
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All DBs
Position
7:7921091..7947634
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AA seq
691 aa
AA seq
DB search
MARDFNMLQIIMLVQVLCLALGQVTGPPGAQGPRGLPGPSGTPGADGIDGEQGPPGPPGP
RGQKGDPGQPGPDGPPGEDGIEGLTGGKGERGPRGNPGQKGLPGPTGPQGPNGLGLPGLP
GPAGPIGLPGEIGIPGPKGASGPLGPQGLPGPPGKPGPPGKFLGLEEGSADFQCPTNCPP
GPKGPQGLHGMKGHKGRAGILGAPGNIGKPGIKGDSGISGEQGIPGPPGPQGLRGYPGMV
GPKGERGPPGYKGISGPIGFPGIPGKEGPRGSPGEAGEKGDKGDQGIRGLQGAVGKKGEN
GLPGIDGKDGTPGIPGIKGAPGQNGRPGPPGHQGTAGLPGSPGTKGGVGAKGEPGPRGFS
GMSGAPGPQGEPGPPGEAGMTGVPGPKGDRGERGPVGLQGIVGKPGIKGERGPIGIPGPQ
GLTGTKGDKGFQGKVGAKGDFGDPGVEGLAGEKGEKGLSGEPGPKGQQGVRGDPGHNGPT
GDPGKPGDLGPSGLPGPRGLHGVRGAPGMPGIQGSAGRDFTDQHIIEVVLKMLQEKLAAL
AVSAKREVKGGAGVMGPPGPPGRPGPPGPQGNHGPTGTRGIPGMIGAAGQIGNTGPKGKK
GLKGVTGDPGRPHPGLPGPPGFPGPPGLDGVARDGKPGERGPQGAAGQPGYPGKVGPTGL
PGFCEMAACLAASAYTSPRLQEAGTVKGPST
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctcgggattttaacatgctccaaattatcatgctcgttcaggtgctctgtctggct
ctgggtcaagtgactggcccacccggggctcagggccctcgtggtctccccggcccttca
ggtacccccggagccgacggcatcgatggtgaacaagggcctcctgggcctcctggacct
cgtggtcagaagggagatccaggccagccgggcccagacggtcctcctggggaagatgga
attgaaggtctgactggaggaaagggtgaaagaggtccccgtggaaatcctggacaaaag
ggtctacctgggcctactgggccacaaggaccaaatggacttgggcttcctggacttccc
ggaccagcaggtccgatcggtcttcctggggaaattggaattcctggtcccaagggagct
tcaggacctttaggaccacaaggtttgccaggaccaccagggaaacctgggccacctggg
aagttcttgggtttggaagaaggcagtgctgatttccagtgtccaactaactgtccacct
ggtcctaaaggtcctcaaggcctgcacggcatgaagggtcataaaggtcgggctggtata
ctaggagctccaggaaacattggaaagccgggcataaagggagatagtgggatctctggt
gagcaaggaataccaggccctccaggtccacaagggttgagagggtatccaggaatggtt
gggcccaaaggagagaggggccctccaggatacaaaggtatttctggacccattggattt
cctggaatccctggtaaagagggacctcgaggttctcctggagaggctggagaaaaaggt
gataagggtgaccaaggcatcagaggactacagggagcagttggaaagaagggagagaat
ggtctcccagggattgatggcaaagacggcacccctggcattccaggaataaagggtgct
ccaggacagaatggaagacctggtccaccaggccaccaggggacagcaggtttgcctgga
agtcctggcaccaagggtggtgtgggtgcgaagggtgagccaggacctagaggtttttca
ggaatgtctggtgctcctggtcctcagggtgagccaggaccaccaggtgaagctggtatg
accggagttcctgggccaaagggtgacaggggtgagagaggacctgttgggcttcaggga
atcgttggcaagcctggaattaaaggagaacgcgggccaatcgggatcccaggacctcaa
ggccttactggaaccaaaggagataagggattccaaggcaaagtgggagcaaagggagac
tttggcgatccaggggtagagggattggcaggagaaaagggagaaaaggggctgtctggt
gaacccggccccaaaggacagcaaggagtgaggggtgatccaggacacaacggacctaca
ggcgatcctggaaaacctggagacctgggtccttctggtcttcctggaccacgaggcctc
catggagtgagaggtgcacccggcatgccaggaatacagggatcagctggtcgtgatttc
acagatcaacacatcattgaggtggtcttgaagatgctacaagaaaagttagctgcttta
gcagtgagcgctaagagggaagtaaaaggaggagcaggagtaatgggaccaccaggtcct
ccaggtcgtcctggacctccaggacctcaggggaaccatggccctactggtacccgaggc
atccctggcatgattggagctgcaggccaaatcgggaacactggccctaaaggaaagaaa
ggtctaaaaggagtgacaggagaccctggtcgccctcatccaggtctaccaggaccacct
ggctttccaggtcctcccggtctggatggagttgcacgagacggcaaaccgggagaaaga
gggcctcagggtgcagcaggtcaaccaggttatcctggaaaagtaggtcctactggcctt
cctggcttctgtgaaatggccgcatgcctggcagcgtcagcttacacatccccacgactc
caggaagctggcacagtcaagggaccgtccacttaa
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