Tachysurus fulvidraco (yellow catfish): 113634769
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Entry
113634769 CDS
T08119
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03013
Nucleocytoplasmic transport
tfd03015
mRNA surveillance pathway
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113634769 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
113634769 (ddx39b)
03015 mRNA surveillance pathway
113634769 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113634769 (ddx39b)
03041 Spliceosome [BR:
tfd03041
]
113634769 (ddx39b)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113634769 (ddx39b)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113634769 (ddx39b)
Spliceosome [BR:
tfd03041
]
Complex C
Other components
EJC/TREX
113634769 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113634769 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
113634769
NCBI-ProteinID:
XP_026989725
LinkDB
All DBs
Position
7:5948994..5959425
Genome browser
AA seq
446 aa
AA seq
DB search
MTTVKTVNSRMTENDVDNELLDYEEDEVDATGGVGDGVLAGDGSTVALRKEGLKGSYVSI
HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLA
TLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPAIKVAVFFGGLPIKKDEETLK
RESPHIVVGTPGRILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK
QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL
DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMPQEERLARYQQFKDFQRRILV
ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDESDARTLND
VQDRFEVNITELPEEIDISSYIEQTR
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgacgacggtaaagacagtaaacagcagaatgacggagaacgatgtggacaacgagctg
ttagactatgaggaggatgaggtggatgcgacaggaggtgtcggggacggagtgctcgct
ggagacggcagtactgtggccttgagaaaagaaggactcaaaggatcctatgtttccatc
cactcctcaggtttcagggacttcctgttaaagcccgagctcctcagggccatcgtggac
tgcggcttcgagcatccgtctgaggttcagcatgagtgcattccacaagccatcttgggc
atggatgtgttgtgccaggccaagtcgggtatggggaagacggccgtctttgtcttggcg
acactccagcagctggagccagtgactggccaggtgtcagtgctggtgatgtgtcatacc
cgagagctggctttccagatcagcaaagagtacgaacgtttctccaagtacatgccagct
ataaaggtggcagtgttctttggtggtttgcctataaagaaggacgaggagacactaaag
agagagagtcctcacatagtggtcggaacgcctggccgtatcttggccctgtcacgcaac
aagagtctcaacctgcgtcacatcaaacacttcatcctggacgagtgtgacaagatgctg
gaacagcttgacatgagacgtgacgtccaggagattttccgcatgaccccacacgagaag
caggtcatgatgttcagcgccaccttgagcaaagaaatccgtcccgtctgccgaaagttc
atgcaagatcccatggaaatatttgtggatgacgagaccaagctgaccctgcatggcctg
cagcagtactacgtcaagctgaaggacaacgagaagaacaggaaactgtttgatctgctg
gacgtgctggagttcaatcaggtggtgatctttgtgaagtcagtgcagcgctgcatcgct
ctcgctcagctgctggtggagcagaacttcccggccatcgccatccacagagcgatgcct
caggaggagaggctcgctcgatatcagcagtttaaagactttcagagacgcatcctcgta
gctactaacctgttcggcagaggaatggacatcgaaagagtcaacatcgcctttaactac
gacatgcctgaggattcggacacgtacctgcacagggtggctagagcgggcaggtttggc
acaaaaggtctagccatcacgtttgtgtcggacgaaagcgacgcccggacgctgaatgac
gttcaggacagattcgaggtgaacatcactgagcttccagaggagatcgacatctcgtct
tacatcgagcagacgcggtaa
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