Tachysurus fulvidraco (yellow catfish): 113635648
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Entry
113635648 CDS
T08119
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113635648 (si:ch211-114c17.1)
Spliceosome [BR:
tfd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
113635648 (si:ch211-114c17.1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
HAT_Syf1_CNRKL1_C
TPR_15
TPR_11
TPR_MalT
UTP6_C
HrpB1_HrpK
ARM_TT21_2nd
Iml2-TPR_39
Motif
Other DBs
NCBI-GeneID:
113635648
NCBI-ProteinID:
XP_026990998
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All DBs
Position
17:18639253..18648336
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AA seq
713 aa
AA seq
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MATERAEAFGDNGEFAHSGCEAPEVTKFPQPDLGVSEDMGGTDMADPSLAYSTGPVTGEE
EMEEQELPVDFDRQWKLVNENPQDFNSWTDLLQYCEQEGHLRASRQALSAFLSRYPLCYG
YWKKFADLERRAGHNNKAEEVCVQGLTAIPLSVDLWIHYINLLLGTLNMNLPESTQRIRS
VFEDALAAAGWDWHSDRLWDLYAEWEKEQGDLRAMTAVYERVMRVPTQLYRTHYEKLKTC
LTSDPLQDVLSPEEYEKVKAEYRENQIQAKKEVSEVTAGEEEVEEDRPPGEDDPANDGKD
SEEEMQKMRELVLASREEMHQQNEAEVRKRWNYEDAIKRPYFHVKPLDRPQLKAWHTYLD
WEMAEAEAAHAVIEGMSVEGQEGSEVKVGIADHRRVKILFERCLIACALYEEFWDKYVQY
LQPRSLEEARSVYRRACEIHLPYKHSFHLQWAMFEEQHGNISEAHRILEALEKAMPGLAV
VRLRRVGLERRTGHLDKAESLLKESLEENKDKPHLHAFYSIKLARFLHKISKNASRARAV
LQEAIEISPDNSKLYMNLLDLELSGDLRVNGGGVQQCVSKALAAPLSSDSKILFSQRGLQ
FAEDFGTTVQSVLSIYEEHQKLLNDLGAKKRGAENSSDGDDPEKISKMDDGSALAAAQET
VPPNMPPVPPPPVVGGDTSGYGNYGNWYQQQQYGGYGAYSNPWNQYSQYYPSS
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgaacgcgcagaagcgtttggcgacaacggggaatttgcacattccggatgt
gaagctcctgaggtcactaaatttccccagcctgatttaggggtatctgaagacatggga
ggaacagacatggcagatccatcattagcctacagcacaggtccagtgaccggagaagag
gaaatggaggaacaagaactgccagtggattttgacagacagtggaaactggtgaatgag
aacccacaggatttcaacagctggaccgatttgttacagtattgtgaacaagagggtcat
ttgagagcatctcgtcaggccctgagtgcattcctgtctagatacccactctgctatgga
tactggaagaagtttgcagatttggaaaggagagcaggacataacaacaaagctgaggag
gtgtgtgtgcaaggacttacagcaatccctctcagcgtggatctgtggatacattatatt
aacctcctgcttggcacactgaatatgaacctgcctgagtcgacacagcgcattcgcagt
gtgtttgaggatgctctggctgctgcaggctgggactggcactcagaccgcctgtgggac
ctgtacgcagagtgggagaaagaacaaggagacctgagagccatgactgcagtctatgag
cgtgtgatgagagtgcccacccagctctacagaacccactacgaaaaattaaagacctgt
ttaacatcagatccacttcaggatgtcctgagccctgaggagtatgagaaggtgaaggct
gagtacagggagaatcagatccaggctaagaaagaggtgtctgaagttacagctggtgag
gaggaggtggaggaggacaggccgcccggggaggacgatccggcaaacgatggcaaagat
tcggaagaggaaatgcagaaaatgcgtgagctggtcttggctagtagagaggaaatgcat
caacagaatgaggctgaggtcaggaagagatggaattatgaagatgcgattaagaggcca
tatttccatgtgaaacctttggaccggccccagctgaaagcatggcacacatacctggac
tgggaaatggctgaagctgaggcagcacatgctgtcattgaggggatgagtgtggaaggt
caggagggttcagaggtcaaagtgggaattgctgaccatcggagggtgaagatactgttt
gagcgctgcctcattgcctgtgcactctatgaggagttctgggataagtatgtgcaatat
ctacagccacgtagtctggaggaggcgcgcagtgtttaccgtcgagcttgtgaaatccat
ctgccatacaaacacagttttcacttgcagtgggcaatgtttgaggagcaacatggtaat
atctctgaggcacatcgtatcctagaagctctagaaaaagcaatgcccggtctggccgtg
gtgcggctccggagggtggggctagagaggaggacgggtcatctggacaaggcagagtca
ctgctgaaggagtcacttgaggagaataaagacaagccacaccttcatgccttttactct
attaaactggcccgctttcttcacaaaataagcaagaatgcgtcgcgggctcgtgccgtg
ctgcaagaggccatcgagattagcccagacaatagcaagctgtacatgaatctgctggac
ctggagctatctggggacctgcgggtcaacggaggaggagtccagcagtgtgtgagcaaa
gctttagctgcacctctctcgtcagatagcaagattcttttctcccaaagaggtctgcag
tttgctgaggattttgggaccacagtgcaaagtgtgctgagtatctacgaggaacaccag
aaactgctaaatgatcttggtgcaaagaaacgtggagcagagaacagtagtgatggcgac
gatccggagaaaataagtaaaatggatgatggctctgctctagcagcagctcaggaaact
gtcccacctaatatgccccctgttcctcctcctccagtggtgggtggagatacaagtggg
tatggaaactatgggaactggtatcagcaacagcagtatggaggatatggtgcctactcc
aacccctggaaccagtacagtcagtactacccttccagttag
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