Tachysurus fulvidraco (yellow catfish): 113635668
Help
Entry
113635668 CDS
T08119
Symbol
nxf1a
Name
(RefSeq) nuclear RNA export factor 1 isoform X1
KO
K14284
nuclear RNA export factor
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03008
Ribosome biogenesis in eukaryotes
tfd03013
Nucleocytoplasmic transport
tfd03015
mRNA surveillance pathway
tfd05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113635668 (nxf1a)
03015 mRNA surveillance pathway
113635668 (nxf1a)
03008 Ribosome biogenesis in eukaryotes
113635668 (nxf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
113635668 (nxf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113635668 (nxf1a)
03009 Ribosome biogenesis [BR:
tfd03009
]
113635668 (nxf1a)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
113635668 (nxf1a)
mRNA cycle factors
Stress granule specific factors
113635668 (nxf1a)
Ribosome biogenesis [BR:
tfd03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
113635668 (nxf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
LRR_4
NTF2
LRR_9
LRR_8
UBA_8
UBA_4
Motif
Other DBs
NCBI-GeneID:
113635668
NCBI-ProteinID:
XP_026991032
LinkDB
All DBs
Position
17:15885558..15898869
Genome browser
AA seq
652 aa
AA seq
DB search
MFPHRRRFSLSVVKHSEGLSEVPAVREVWINGRVSEHDDRVGGPHFRNRHGPPRGRVYNV
HQRLRGGPTGGFSPGSLGRFVDEDGDVNMNSGQGGAFQRRFNPYGWGNRRGEFRIAQDRR
GAGRSRPGRGSQLQGNAERQGGLPISGNSKMWYKITIPFGKKYDKRWLLSSLQNLCPIPF
TPVHYSMEGQKVQFYVEDGNIASALHNISHRIKDNEGYKVVVITNPCSPPSFLQNDLKEQ
DIQHLKQCMSKRFDSSEQFLDLNSIRTDQDLISQNISVILSRKNCMQAVMKIIKENIPQL
TALNLSNNKLYKLDDLTELLNIAPNLKTLNLSNNELKSEQELDKLKSLKLTELWLDRNPL
CDHFTDQATYISAVCGRFPRLLKLDGHSLPAPIGFDVETRTAVPSCKGSYFVSGEVKQFI
LHFLNQFYSVYDSGNRQPLLNAYHDGACFSLSLPFTIHNPSKSNLGEYHNHNRNIKRIKD
PVTRFRVLKHTRLNVVAFLNELPKTQHDLASFTVDVNTCTQTLLVFTVSGVFKDIDIKSK
ESTRAFSRVFVAVPAMNNGLCLVNDELFVRNATTEEMRHAFVTPAPTPSSSPVSTHSPSQ
QQEMISTFSQKFQMNHEWSQKWLQQNDWDFNRAVQLFIELKAQGSISDAAFT
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgtttcctcaccggcggcggttcagtctgtctgtagtcaaacactcagaaggtttgagt
gaagtgcctgctgtaagagaggtctggatcaatggcagagtttcggagcatgatgaccga
gtgggtggccctcatttccgtaaccgtcatggaccacccaggggacgtgtgtacaatgta
catcagagactgagagggggtcccacaggaggcttcagccctggttccttgggcaggttt
gtggatgaagatggagatgtcaacatgaacagtggtcagggtggagcattccagcggaga
ttcaacccgtatggctggggcaatcgacgaggggaattcagaattgctcaagacagaaga
ggagccgggagatctaggccaggaagaggaagtcaattacaaggcaacgcagaaagacaa
ggaggtctaccaatttctggaaactccaaaatgtggtacaaaataacgatcccttttgga
aagaagtatgataagaggtggcttttgagttctctgcagaatctctgccccattcctttt
actccagtacattactccatggaggggcagaaagtgcaattctacgtagaagatggcaat
attgccagcgccctgcacaatatctctcacaggatcaaagataatgaaggatataaggtt
gttgtgatcacaaacccctgttctccaccatccttcctccagaatgacttgaaagaacag
gacattcagcacttaaagcaatgcatgtccaagcgctttgattcctcagagcagtttctt
gacctcaacagcatacgcactgatcaggatctgatttctcagaacatcagtgtgattttg
agtaggaagaactgcatgcaggctgtgatgaagatcattaaagaaaatatcccacaactg
actgcattaaacctaagcaataacaagctctacaagctggatgacctcacagagctactg
aacatcgctcccaacctgaagactctcaacctgtcaaataacgagctgaagtctgagcag
gagcttgacaagctgaagagcttgaagctgacagagctgtggctggatcgcaatccactg
tgtgatcactttacagaccaggcaacatatatcagtgctgtttgtggacgattccccagg
cttcttaaactggacggtcacagtcttcctgcacccataggttttgatgttgaaacccgc
actgcagttccttcctgtaagggcagctactttgtttcaggagaagtcaagcaatttatt
ctgcattttctgaaccaattctacagcgtgtatgactcgggaaacagacagcctctactg
aacgcatatcatgatggggcctgcttttccctcagccttcccttcaccatacacaacccc
tctaagtcgaacttgggagaatatcataatcacaaccgcaacattaagagaatcaaagat
ccagtgacgcgattccgtgttttgaaacacactcgactgaacgtagttgccttcctgaat
gaactgcccaaaacccagcatgacttagcctctttcaccgtggatgtaaacacatgcaca
caaacattactggtgtttacggtcagtggggtatttaaggacattgatatcaagtcaaaa
gaatctactcgtgccttctcccgtgtctttgtcgcagttccagccatgaataatgggcta
tgtttagtcaatgatgagctctttgtgaggaacgctaccactgaagagatgcgccatgca
tttgtcacacctgccccaaccccgtccagcagccctgtgtctacccactctccctcccag
cagcaggagatgatctccaccttctcgcagaaatttcagatgaatcacgaatggtcccaa
aagtggctacagcagaatgattgggactttaaccgagctgttcagctctttatagaactc
aaggctcagggctccatatcagatgcggctttcacatag
DBGET
integrated database retrieval system
