Tachysurus fulvidraco (yellow catfish): 113636593
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Entry
113636593 CDS
T08119
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113636593
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
113636593
Spliceosome [BR:
tfd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
113636593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
HA2_C
Helicase_C
OB_NTP_bind
R3H
DEAD
Ank_2
AAA_19
HA2_N
ATPase
Ank
nSTAND3
AAA_22
PhoH
ABC_tran
AAA_7
SRP54
AAA_23
AAA_30
AAA_29
Zeta_toxin
TrwB_AAD_bind
FtsK_SpoIIIE
Motif
Other DBs
NCBI-GeneID:
113636593
NCBI-ProteinID:
XP_026992587
LinkDB
All DBs
Position
26:2478163..2493588
Genome browser
AA seq
1425 aa
AA seq
DB search
MSRSNSTAWKAHTNPSKTSSSLKAKGLKDIRVNEEVKIAVNIALERFQYSDQREMEFPSS
LTSTERAFVHRLAQSLGYVSKSRGKRIHRVLTIWKKDCPESAQSVMTFNLTHNSKLVVQN
LLQRFPITSKERTDLLQRTERGLVASPEAAGNGRDKNRMGGPLNNKIPQVPQKRGPSELE
SFRRSLPVYERQEEIVTTIKENQVVLIVGETGSGKTTQIPQFLLDDCSQKGNPCRIYCTQ
PRRLAAIAVAERVAAERGESVGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDTIL
SPVTHVIVDEVHERDGLTDFLLTKIRDVLQKMPSLKLILSSAALDVDLFIRYFGLCPIIY
IKGRPYDVKSVFLEDILRTTGYTNKEMAKYKSEIQKEAKQQTSLTEWCEVKAGASPPESQ
KKQHSDTVLPDTELLDSGGDSVFCQMSEKDVTSLEPWLVKEMDSCISTIFLQQDAGAFVQ
LFNLIVNENVSVDYRHCETSATPLMVAAGRGFITQMEQLLSMGANVHLKASNGWTALDWA
KQFNQTEAVDLLESHISSLEAGHLDESSLVQSHSEELSAQDQELLKAYHHSFDDEKVDLD
LIMHLLFNICQSSDEGAVLIFLPGYDEIVGLRDRILFDDKRFADHQQRYQVFTLHSNMQT
ADQRKVLKPAPCGVRKIILSTNIAETSITVNDVVFVIDSGKVKEKAFDSLNHVTMLKMVW
ISKASAIQRKGRAGRCRPGICFRLYSRLRFNNMLEYQVPQLLRMPLQELCLHTKLLAPFT
CSIAEFLAKAPEPPPLLTVKSAVQMLKTIDAMDPWEDLTKLGFHLADLPVEPHLGKMVLC
AVVLKCLDPILTIACMLSYREPFVLPSQASQKRAAMLCRRCFSANTFSDHMALLRAFQAW
QKARSDGWERSFCEKNFLSQATMEIIMRMRTQLLGQLRAIGFVRARGCNDIRDVNLNSEN
WAVVKAALVSGMYPNLILINRDKQTLRGAKEKKVRFHPASILSQPQYKIPPANSQAVAVQ
SLPTDWLIYDEMTRAHRIASVRCCTAVTPITVAVFGGCAKLPSTALQEPSTPHVLVNALG
EDSDSENETRSTDQLAQMKIDEWLNFKLDPEMVSIVFQLRQRWHSLFLRRIQCPSKPWSQ
LDEATIRAVVSVLSSEEQAAGLQQPTGIGQRPKPISTEEPQHQLNSWKSNRHRSGMEQSY
EAPTPDRSPKAPTAVSQSKSQRDKGAAFSKRSADDHLPVKSDSPSLSSPSASPSSTSSAK
ELAALMSPLTGVSKSPSPRLRPSVRYFIMKSSNMRNIELSQQRSIWSTTPNNEHKLNRAF
QESSAVFLIFSVQGSGHFQGYARMSSEIGSERCKDWGATGLGGVFSVEWIHKESLSFQCT
HQLLNPWNENKKVQISRDGQELEPQAAAQLLQLWNCFSSKQQHEQ
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtctcggtcaaactccaccgcttggaaagcacacacgaacccgtcaaagacgtctagt
tcattaaaagccaaagggctgaaagacatcagggtcaatgaagaagttaagattgcggtg
aacattgcgctggagaggttccagtacagcgaccagagagagatggagtttccttcttcg
ctgaccagcacagagagagcattcgtacatcgcctcgcacaatctctgggttacgtttca
aaaagcagaggtaaaagaatacaccgtgttctcacgatatggaagaaggactgtccagag
tcagctcagtccgttatgacctttaaccttacccacaactccaagcttgtggttcaaaac
ctgctgcagaggttcccaattaccagtaaagagcgtactgatctgctccaacgcaccgag
agagggctcgtggcttctccagaagctgctggtaatggaagagacaagaacaggatgggt
gggcccctaaataacaaaatccctcaggtccctcagaagagaggcccctctgagctcgaa
tcctttcggagatcgctgcccgtctacgagcggcaggaggagattgtaaccaccatcaag
gagaaccaggtggtgctgattgtgggtgaaacgggctcaggaaaaaccacccagattcct
caattcctgctggacgactgcagccaaaaaggaaatccctgtcgcatctactgtacgcag
cccagaaggttggctgccattgctgtggcggagcgagtggcagcagagagaggagagagc
gtcggtcagaccatcggatatcagatccggttggagagcagagtttctcccaagacctta
ctaacgttctgcacaagtggcgtgttgctcagaacgctgatggccggagacaccatcctc
tcccccgtcacacacgtcattgtggacgaggtccacgagcgagacggcttgacggatttt
ctcctgaccaagattcgggacgtgctccagaagatgccttctctgaagctcattctctcc
agtgctgccctggatgtggatcttttcatcagatactttggcctttgcccaattatttac
attaagggacggccatatgatgtaaaaagcgtctttctggaggacattttgcgaaccact
ggctacacaaacaaggagatggccaaatataagtcagaaatccaaaaagaagcgaagcag
cagacgtctcttacagagtggtgtgaggtaaaagcaggcgcgtcaccgccagagtctcag
aaaaaacagcattctgacaccgtcctgccggacactgagctgctggacagcggaggggac
agtgtcttctgccagatgagcgaaaaagacgtgacctcgctggagccgtggctggtgaag
gaaatggacagttgcatctcgaccatctttctgcagcaggatgctggtgcctttgtgcag
ctttttaacctgatagtcaacgagaacgttagcgtggactacaggcactgcgaaacgagt
gccacacctctgatggtggctgcagggagaggcttcatcacccagatggagcagctctta
agcatgggggccaacgtgcaccttaaagcttctaatggctggactgctcttgactgggct
aaacaattcaaccagactgaagctgtagatctgctagagtcacacatttcgtctctggag
gcaggtcatttggacgagtcctccctggtgcagtcacacagcgaggagctcagcgctcag
gaccaggagcttctcaaagcttaccaccacagcttcgatgatgagaaggtggacctggat
ctcatcatgcacctgctcttcaacatctgtcagagctccgatgaaggtgcagtcttgata
tttttgccaggatacgatgagattgttggactgcgggaccgcatccttttcgacgataaa
agattcgcagatcatcagcagaggtaccaggtgttcaccctacactccaacatgcagact
gcagatcagaggaaagttttgaaaccagctccatgcggagttcgcaaaattattctctca
actaacatcgctgaaacaagcatcaccgtcaacgacgtcgtctttgtcatcgactctggc
aaggttaaagagaaagctttcgattccctaaatcacgtgaccatgctgaagatggtgtgg
atatcaaaagcaagtgcaatacagcgtaaaggaagagctggacgctgcaggccagggatc
tgtttccgtctgtacagccggctgcgcttcaataacatgctggagtatcaggtccctcag
ttactgcgtatgcctctgcaggaactctgtcttcacactaaacttttggccccttttacc
tgctccattgctgagttccttgccaaagccccagagccaccacccttactcacagtcaag
agcgctgtgcagatgcttaagaccatagacgccatggacccatgggaggacctgaccaaa
ctgggcttccacctagcagacctccctgtggagccacacctggggaagatggtgctatgc
gcagtggtgctgaagtgcctggacccgatcctcaccatcgcctgcatgctgtcctacagg
gagcccttcgtgctaccatctcaggcttcacaaaaacgagccgccatgctgtgcaggaga
tgcttctctgcaaacaccttcagtgatcacatggccttgctccgtgcttttcaggcatgg
cagaaagcacgcagcgatggctgggagaggtctttctgtgagaagaactttctatcacag
gctacaatggaaatcatcatgaggatgcgcacccagctgctcggccaactccgtgccata
ggatttgttcgtgctcggggttgcaacgatatcagggatgtaaatctaaactctgagaac
tgggcagtggtgaaggcagcactcgtatcgggcatgtaccctaacctgatcctcataaac
cgtgacaagcaaacactccgaggtgccaaagagaagaaggttcgcttccaccctgcatcc
atcctgagccaaccccaatacaagatccctccagctaactctcaagcagttgcagttcag
tctctgcccacagactggttgatctacgacgagatgacacgagcacacaggatagccagc
gtgcgctgctgcaccgcggtcactccgatcaccgtcgctgtgtttggaggttgtgccaaa
ctgcccagcacagcacttcaggaaccttctacacctcatgtgttggtcaatgctctgggt
gaggacagcgatagtgagaatgagacccgctccacagatcagctggctcagatgaagatc
gacgagtggcttaacttcaaactggatccggagatggtgtctatagtgttccagctgagg
cagcgttggcatagcctgtttctaaggagaatacaatgcccttcaaagccgtggtcccag
ctggatgaggcgacgatccgggccgtggtgtcggtgctgagcagtgaagagcaagcagct
ggcctgcagcagcccacgggtatcggccagagacccaaacccataagcacagaggagcct
cagcatcagttaaacagctggaagagtaacagacacaggagcggcatggagcagagctat
gaggctcccacaccagatagatctccaaaagcaccgactgccgtctctcagtccaagagc
caaagagataaaggtgctgccttttccaaacgttcagctgatgaccatctcccagtaaag
tcagacagccccagcttgtccagtcctagcgccagtccctcatccacttcctcagcaaaa
gaactggctgctcttatgtcacctttaactggggtttccaagtcaccatcgccaaggctc
agaccttcagtgcgttacttcatcatgaagagcagcaacatgaggaacatcgagctctcc
cagcagaggagcatctggtcgactacacccaacaacgagcacaaactaaaccgagccttt
caggagagcagcgccgtcttccttatcttctccgtgcaaggctccggacacttccagggt
tacgctcggatgagttcggagatcggatcggagcgatgtaaggactggggtgctaccgga
ctgggaggagtcttcagtgtggagtggatccataaagagagtctctcatttcaatgcact
caccaactcctcaatccctggaacgaaaacaagaaagtgcagatcagccgagacggacag
gagctggagcctcaggctgcagcacagctgttacaactctggaattgcttctccagcaaa
cagcagcacgagcagtga
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integrated database retrieval system
