Tachysurus fulvidraco (yellow catfish): 113637639
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Entry
113637639 CDS
T08119
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3 isoform X1
KO
K08736
DNA mismatch repair protein MSH3
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
113637639 (msh3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113637639 (msh3)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
113637639 (msh3)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_II
MutS_IV
Motif
Other DBs
NCBI-GeneID:
113637639
NCBI-ProteinID:
XP_026994182
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Position
9:complement(11544831..11606920)
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AA seq
1100 aa
AA seq
DB search
MNSKLKRLTAGKTCVKSNTQTTISRFFSSAADKGAKLDEPRINIADHSQESRGKKRLLLS
DGGSFFKKRLKVSHNTEDSSKEEKPMSSTSSDASTKLEEQGSANKASLSCSTLEKLRGFS
CHAGSGSREACPSVKTEGSGAGQLESKIKMEEDTEEDLVYQSKQVINCSKFAKASGVSVS
KRSPPEPAGPNKRTKSIYTPLEQQYMEIKEQNKDTVLCVECGYKYRFFGEDAEIAAKELN
IFCHMDHNFMTASIPTHRLFVHVRRLVSQGYKVGVVKQTETSAIKASSANKSSLFTRQLS
ALYTKSTLVGEDVNPLMKLGDLEQADDVVQDTASSYLMCVSESWEKQSKELTIGLVVVQP
SIGDVMVDCFKDNPSRSELEARVLRIQPVEILVPSNLSETTEHLLHTIVLASVQADDRIR
IEKRDSTQFEYSTAMVTVTNFYSSVTHQTAEDQEKGSSPFYLNLESQIICSLGPMIQYLT
DFKLERALLCSSLLKRLSSDAEHMVLSATTLKNLEIFCNQTTGTVKGTLLWVLDHTSTPF
GKRLLKKWVSQPLKSPSEILLRQEAIAEILSSESVVLPSIQNLLSRLPDLERGLCSIYHK
KCSTQEFYLISSTLSRLSAELQALVPAIQSQLSSALLKNLLLDTPQLLSPAHKFLKVLNE
KAAKAGNKTELFEDLTDFPAIKERKDEIQAVLSEMIEHQRELRIVLRNPSLDYTTVSGQE
FLVEVKNSMSSIVPSDWVKMNSTKLMGRYHSPFVVEKYQHLLRLREQLVIDCGREWLSFL
QLFGDHYYILKKAVGYLATVDCLFSLAQVAKDNNYCRPEVLEQESRIVIREGRHPVINML
MAEQDQYVPNDTDLQGEGKRAMIITGPNMGGKSSYIRQVALLTIMAQLGSFVPASEASFG
IVDGIYTRMGASDNISKGRSTFMEELVEASEILSRATARSLVILDELGRGTSTHDGIAIA
YATLEFLIRDVRCLTLFVTHYPPLCELEKLCPCHVGNYHMAFLLNEPETAAAVEEVQPEF
ITFLYQLTEGAAARSYGLNVARLAEIPQSILTSAALKSKELEAIVNSRRKTVKLLNDAWK
ITNRESLLEWIKSDTNKMCV
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaattctaaacttaagagactgacagcaggaaagacttgtgtgaagtccaacacacag
acgactatcagcagattcttcagcagtgcagctgataaaggcgccaagctcgatgagcca
aggattaacattgctgatcacagtcaggagagtagaggcaagaaaaggctgctgttatct
gatggaggtagcttcttcaagaaacgccttaaagtttctcacaacacggaagactcttcg
aaggaggagaagccgatgagcagtacgagctctgatgctagcactaaattagaagagcag
gggtctgccaataaggctagtctttcctgctccacactggagaagctgcgaggttttagc
tgccatgcaggaagtgggagcagagaagcatgtccgagtgtgaagactgagggctcagga
gcaggacaactagaaagcaagatcaagatggaggaagacactgaagaagatctggtttat
cagagcaaacaggtgattaactgcagtaagtttgctaaggctagcggtgtttctgtgtct
aagagaagtcccccagaacctgcaggacctaataagaggaccaaaagtatttacactccc
cttgagcagcagtacatggagattaaggagcaaaacaaagacacagtactttgtgtggaa
tgtggctacaagtacaggttctttggagaggatgcagagattgctgctaaggagctaaac
atcttttgccatatggatcataacttcatgacagccagcatccctactcatcgcctgttc
gtgcatgtgcgccgcctcgtctctcaaggctacaaagtaggagttgtaaaacagacagaa
acctcagcaatcaaagcctccagtgctaacaagagctccctcttcacccggcagctaagc
gcactttacaccaagtctacactggttggggaagacgtaaaccccttgatgaagctaggg
gacttggagcaagcggacgatgtagtacaggacacagccagcagctacctgatgtgtgtg
agtgagagctgggagaaacagagtaaggagctgactataggcttggtggtggtgcagccc
agcatcggtgacgtgatggtggactgttttaaagataatccgtctcgctcagagctggag
gccagagttcttaggattcaacctgtagagatcctggtaccctccaacctgtctgagacc
accgagcacctactgcacaccatcgtactggccagtgttcaggcagatgatcgcattcgt
attgaaaagcgagacagcacgcagtttgaatactccactgccatggtgaccgtcaccaac
ttctacagcagcgtaactcatcagacagcagaagatcaagaaaagggttcctctccattc
tatctaaatttagagagccagattatctgcagtttggggcccatgatccagtatctgact
gactttaagctggagagggctctgctctgttccagtttgttgaagaggctgtcgagtgat
gccgagcacatggtactgagtgccactaccctgaagaacctggagatcttttgtaaccag
accacaggcacagtgaagggcactctgctctgggttctggaccatacaagcactccattt
gggaagagactgctaaagaaatgggtcagccaacccctaaagtctccatctgaaatcctg
ttgcgtcaggaagccatagcagaaatcctgtcctcagagtcagttgtgttgccgtccatc
cagaacctactcagtcggctgccagacctggaaagaggtctctgcagcatttatcataag
aagtgttccactcaggagttttacctcatcagcagcacgctgtcccgcctaagtgcagaa
ctccaagctctcgtacccgccatccaatcacagctcagctccgcccttttaaagaacctg
ctcctggacacgccccagctcctcagccctgcccacaagtttcttaaagttctcaatgaa
aaggctgcaaaggctgggaataaaactgaactttttgaggacctgaccgattttcctgca
attaaggaaagaaaagatgagattcaagctgttctctcagaaatgatagaacatcagcga
gaattgcgcatcgtccttcgaaacccatcactggattacaccaccgtgtctggacaagag
tttctggttgaggtgaagaacagcatgtcctccattgtcccttcagactgggtcaaaatg
aacagcaccaaattgatgggtcgttaccattcgccgttcgtagtggagaaataccagcat
ctgttgcggcttcgtgagcagctggttatagactgcggcagagaatggctcagcttcctc
cagctatttggggatcattactacatcctgaagaaagcagtgggttacctagcaaccgtt
gactgcctcttttcattggctcaggttgctaaagacaacaattattgcaggccagaggtt
ctggagcaggagagccgcatagtgatccgagaaggcaggcacccagtcatcaacatgttg
atggcagagcaggatcagtatgtacctaatgacactgatcttcagggagaaggcaagcga
gccatgatcatcactggacccaacatggggggaaagagctcgtatattcgccaggtggct
cttctcaccatcatggctcaactgggatcctttgtgccagccagcgaggcatcatttggc
attgtggatggcatttatacaaggatgggagcctcagataacatctcaaaaggacgaagc
accttcatggaggagcttgtggaggcctcagagatcctgtctcgtgctacagcacgttct
ctagtgatcttggatgaactcggccgtggcacaagcacacatgatggaatcgccatcgcc
tacgccactctggagttcttaattagagacgtgaggtgtctgaccctgtttgtgacccac
taccctccactgtgtgagcttgagaagctctgtccgtgtcacgttggaaactaccacatg
gctttcctgctcaatgagccagaaactgcagctgcagtggaggaggtgcaaccagagttc
atcactttcctttatcagctgacggagggagcagcagctcggagctatgggctgaacgtg
gcacggctggcagaaatcccacagagcatcctcacatctgcagcgctcaagtccaaagag
ctggaggccatcgtcaacagccgcaggaaaactgtgaagctgcttaatgacgcttggaaa
atcactaatagggaatcattactcgagtggataaagtcagacactaataagatgtgtgtg
tga
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