Tachysurus fulvidraco (yellow catfish): 113638396
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Entry
113638396 CDS
T08119
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tfd03009
]
113638396 (ddx55)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113638396 (ddx55)
Ribosome biogenesis [BR:
tfd03009
]
Eukaryotic type
Pre-60S particles
Helicases
113638396 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
SBF_like
Helicase_C_2
Cas3-like_C_2
TFIIF_alpha
RIC1
Motif
Other DBs
NCBI-GeneID:
113638396
NCBI-ProteinID:
XP_026995347
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Position
20:6067774..6075401
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AA seq
599 aa
AA seq
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MESISDGKWDSLPVKLHDSILLTLKKLEFTYMTPVQSACIPLFMSNKDVAAEAVTGSGKT
LAFVIPLLEILIKREEKLKKMQVGALIVTPTRELAIQISEVMGQFLKEFPQFRQILLIGG
SNPIEDVEKFKANGANIVIGTPGRLEDMFRRKADGLDLASCVKALDVLVLDEADRLLDMG
FEASLNNILGYLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAATSMQKTPA
RLSNYYTICRTEAKFNSLVAFLRQHKHEKQLLFFSTCACVEYFGRALEVFLKNVPILCIH
GKMKDKRNKIFSEFRELKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASSFVHRCGRTA
RIGNRGDALVFLLPMEESYVSFLSINQKCPLQRFPPVKDVVDVLPKLKALALRDRAVFER
GMKAFVSFVQAYAKHECSLIFRLKDLDFAALARGFALLRMPKMPELRGKTFPDFEEITDT
DSIRFKDKNREKQRQKSLQERKEKQTPLQKKNFIKNKAWSKQKSKKDKRKRIAAKRKINE
GSDVDDEDIDELLSDTRLLKKLKKGKISEEDFDKQLSAGRNSKPKKGSPCKDSAEGESE
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggagagcataagtgatggtaaatgggatagtttaccagtgaaacttcacgacagcata
ttgcttactctgaagaagctggaatttacttatatgactccggttcagtcagcatgcatt
cctcttttcatgagcaataaagatgttgcagccgaagcggtaacaggaagtgggaagact
ctagcgtttgttattcctctgctagaaatcctcataaagcgcgaggagaagctgaaaaaa
atgcaagttggagctttgatcgtcacacccacccgagagctggcgatccagatcagtgaa
gttatgggacaatttcttaaggaatttcctcagttcaggcagattttattaatcggtgga
agtaatcccattgaagatgtggagaagttcaaggccaatggggccaacattgtgattgga
acccctggccggctggaggacatgttcaggcggaaagctgatggcctggacttggccagc
tgtgtaaaggctttggatgtgcttgttctagatgaagctgacagactgctggacatgggc
tttgaagcaagcctgaacaatattttgggctacttgcccaagcaaaggcgcacaggcctt
ttctcagctacgcagactcaggagctggagaagctggtgagggccggcctccgaaacccg
gtccgtatcacagtgaaggagaaaggagtggcagctactagcatgcagaagaccccagcg
aggcttagtaattactacacaatctgcagaacagaagccaagtttaactcgctggtggct
ttcctgagacaacataaacatgagaagcagctcctcttctttagcacgtgcgcctgtgtg
gaatatttcggcagagcgctggaggtcttcctcaaaaacgtccccattctttgtatccac
ggcaagatgaaggacaagcggaacaagatcttctcagagtttcgggaattaaaaagtgga
atactcgtgtgcaccgacgtgatggccagaggcatcgacatccctgatgtgaactgggta
ctacagtacgatcccccgagcagcgcaagttcttttgtgcaccgatgtggccgaactgcc
cgtatcgggaaccgaggcgacgctcttgtcttcctcttgccgatggaggaatcctacgtc
agtttcctgtctatcaatcagaaatgtcctctccagcggtttcctcctgtgaaggacgta
gtggacgtgttgcccaagctgaaggctctggctttaagggaccgggcggtgtttgagaga
ggaatgaaagcgttcgtctcgtttgtccaggcttacgcgaagcacgagtgcagcctgatc
ttccgactcaaagatctggactttgccgcattagctcgaggcttcgctcttctccgtatg
cctaagatgcccgagttgagaggcaagacgttccctgactttgaagagatcacagacacc
gactccattcgcttcaaggacaagaaccgagagaaacagaggcagaaatcattacaggag
agaaaggaaaagcaaactccactccagaaaaagaacttcattaagaacaaagcctggtcc
aagcagaaatccaagaaagataagaggaagaggatagctgccaagaggaagataaatgag
ggatcagacgtggatgacgaggacattgacgagcttttgagcgacacacgtctactaaag
aagctcaagaagggaaaaattagcgaggaagactttgacaaacagttgagcgcaggaaga
aattcgaagcctaaaaaaggaagtccttgtaaggacagcgcagaaggagagagtgaatga
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