Tachysurus fulvidraco (yellow catfish): 113639170
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Entry
113639170 CDS
T08119
Symbol
pdzrn4
Name
(RefSeq) PDZ domain-containing RING finger protein 4
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tfd04121
]
113639170 (pdzrn4)
Enzymes [BR:
tfd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113639170 (pdzrn4)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
113639170 (pdzrn4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
113639170
NCBI-ProteinID:
XP_047675167
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All DBs
Position
10:1278836..1341429
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AA seq
741 aa
AA seq
DB search
MGCNLCSLQKREEHYKLLYEISQVNGKDLSRASHEEAVQAFRTAKDPIVVQVLRRQPLPL
GQGSSQDVQLVDVCTQTDITFEHIMALAKLRPSSPPVPDICPFLLSDSCHSLHTMGQEYY
EGSEYLSNMPAEAERTDELEYEEVELCRQNSQEKLGLTLCYRTDDEEDVAIYVSEIGPNS
IAARDGRIREGDRILQINGQDVQNREEAVALLSSEDTRSIVLLVARPEMQLEEAWLDDEH
TEFLEELKMEMLEEQRREEEEMERAAREEEEQVRKAKQEDVMGSSASCSSSQDRSCAAGS
MHHGADSSEQSVLAQLQKRLSRCLRQRREDQDSPREEEGRSEGECYQQLLQLKCQIRNSG
EYDLFYSRSSTIECSLTEQGGSGGMERELRLLNEELRSIELECQSIMQAQQLRKRELQQD
GSAKEQGKQSPHRGKLAHISERPEKSDKDSSSAYNTAESSRSTPLLMDRSPEHSVQRLVS
LTNQKNLRSTMLVGRGSAPCPPVRRAPSGSPDHSNPSESEQTPPAEEESLPRKARTLRSR
IPYLSPRHQHVDIPSHATHYQSYMQLIQQSSAVEYAQCQLSLPAQPSEPKLEWKVKVRSD
GTRYITKRPVRDRLLRERALKIKEERSGGMTTDDDTMSEMKMGRYWSKEERKQQLLRAKE
QRRRREFMQRCRLESLKECPQSSGEGRKELSIIELSQRKMMKKRNKKILDNWMTIQELMT
HGAKAPEGAKVHNAFLSVTTV
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgctcgctgcagaagagagaggagcattacaaactgctttatgaa
atttcacaggtgaatgggaaggacttatcaagagccagccatgaggaagcagtgcaggcc
ttccgcactgccaaagaccccatcgtggtgcaggtgctccggcgccaaccgctgcctctg
ggtcaagggtcatctcaggatgtccagctggtggatgtatgcacacagacagacatcacc
ttcgagcacatcatggctcttgccaaactccggcctagcagcccacctgtgccagacatt
tgtccgttcctgctctcagacagctgtcactccctccacacaatgggccaggagtactat
gaggggagtgagtatctttccaacatgccagctgaggctgagaggactgatgagttagag
tatgaggaggtggagctgtgccgccagaacagtcaggagaagctcggcctcactctctgc
tacaggacggacgatgaagaggatgtcgctatctacgtgtcagagattggacctaatagc
atcgcagcccgtgatggtcgtatccgggaaggggaccgtatcttgcagataaatggtcag
gatgtgcagaacagagaggaagcagtggcgttgctgtcttctgaggacactagaagcatt
gtactgcttgtagccagaccagagatgcagttggaggaggcctggttggatgatgagcac
acagagtttttagaagaactcaaaatggaaatgctagaagaacaaagaagagaggaggaa
gagatggagagagcagccagagaagaagaagagcaggtcaggaaagcaaagcaggaggat
gtgatgggcagcagtgcttcctgctcgtccagccaggacaggagttgtgctgctggatcc
atgcaccatggggctgatagctctgagcagagtgttctggcccagctccagaagagactc
tcccggtgtctgaggcagcgacgggaggaccaagactcaccaagagaagaggaggggcgt
tctgaaggcgagtgctaccagcagctactgcagctaaagtgccaaatccgtaacagcgga
gagtacgaccttttctatagccgcagcagcaccatcgagtgcagcctgactgaacagggc
gggagcggcggtatggagcgtgagcttcggctcctcaacgaggaactgcgtagcattgag
ctggaatgccagagcatcatgcaggcacagcagctccgaaaaagggagctgcagcaagat
ggatctgccaaagagcaagggaagcagagtcctcaccgaggaaagctggcccacataagt
gaacgtccagagaagtcagacaaggacagctccagtgcttataacacggcagagagctca
cggagtacacctctactcatggaccgttcaccagaacattctgtgcagagactagtcagc
ctgactaatcagaaaaacctgaggagcactatgcttgtgggacgtggctccgccccctgt
ccccctgtaagaagggctccgagtggcagccctgaccacagcaacccctctgaatcggag
cagacacccccggcagaggaagagagcttaccaaggaaagcgagaacgttaagatcacgc
atcccctacctctcccctcggcaccagcacgtagacatcccatcccacgccacacactac
cagagctacatgcagctaattcagcaaagctcagctgtagaatacgcacaatgtcagctc
agtcttcctgcgcagccctctgagccaaaacttgagtggaaggtaaaggtgcgcagtgac
ggcacacgctacattaccaagcggccagttcgggaccggctgctgcgcgagcgagcactt
aagatcaaagaagaacgcagcggcggtatgaccacggacgacgacaccatgagtgagatg
aagatgggccgctactggagcaaggaagagcgcaagcagcagttgctgagggccaaagag
cagcggcgacggcgtgaatttatgcagcgctgccggctcgagagtctgaaagagtgcccg
cagagcagtggcgagggccgcaaagagctcagcatcatcgaactcagtcaacgcaagatg
atgaagaagcgcaacaagaagatcctcgacaactggatgaccattcaggagctaatgacg
catggagcaaaagcacccgaaggggccaaagttcacaatgccttcctttcagttacaact
gtatag
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