Tachysurus fulvidraco (yellow catfish): 113639594
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Entry
113639594 CDS
T08119
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
113639594 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tfd03021
]
113639594 (smarca4a)
03036 Chromosome and associated proteins [BR:
tfd03036
]
113639594 (smarca4a)
Transcription machinery [BR:
tfd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
113639594 (smarca4a)
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
113639594 (smarca4a)
Chromatin remodeling factors
BAF complex
113639594 (smarca4a)
PBAF complex
113639594 (smarca4a)
GBAF(ncBAF) complex
113639594 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
113639594
NCBI-ProteinID:
XP_026997341
LinkDB
All DBs
Position
15:13135414..13151253
Genome browser
AA seq
1649 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHGMMGPSPGPPPTGHNLPPQG
PSGYPQENMHQMHKPMEGMHEKGMPDDPRYSQMKGMGMRQGGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGPMMPSGPGGLPMEGGDPQNMGQQNRGGGVAPGPGTGPN
GGPAGPSVPGGTGGPTPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQIAVQGKRPVPGMQ
PVMPNMPPASGPGAGPPGPGGPGPAGPNYNRSHGMVGPNMPPPGPSGVPPGMQGQPPNGP
PKSWPEGPMVNAAAPASAPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPP
PMMLHPKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENIPGSLAGDLRTKAT
IELKALRLLNFQRQLRQDVVVCMRRDTALETALNGKAYKRSKRQSLREARITEKLEKQQK
IEQERKRRQKHQEYLNSILQHAKDFKEYHRSMTGKLQKVTKAVATYHANTEREQKKENER
IEKERMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKK
KKKKRKKTDTGDSGAPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGVDAPKANQLEA
WLEMNPGYEVAPRSDSEDSGSDDEELMTQLFTSPCSPLQEEEDDQTQHSQPHADEKKKIP
DPDSEDVSEFDVRHIIEHAKQDVDDEYSHTQFAIGLQSYYAVAHAVTEKVDRQSSLLING
TLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEYKRLNGPFLIIVPL
STLSNWVYEFDKWAPSVVKVSYKGSPAARRSFVPILRSGKFNVLLTTYEYIIKDKQVLAK
LRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTI
FKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKV
EYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMF
QHIEESFSEHLGFTGGIVSGPDLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIM
EDYFSYRNFKYLRLDGTTKAEDRGTLLKNFNDPSFQYFVFLLSTRAGGLGLNLQSADTVI
IFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG
MFDQKSSSHERRAFLQAILEHEEQDEPLIMFQEEDEVPDDETVNQMIARSEEEFDQFMRM
DLDRRREEARNPKRRPRLMEEDELPTWIMKDDAEVERLTCEEEEEKMFGRGSRQRKEVDY
SDSLTEKQWLKAIEEGTLEEIEEEVRHKKTTRKRKRDRDLDLPGPATPSSSGRGRDKDDD
SKKQKKRGRPPAEKLSPNPPSLTKKMKKIVDAVIKYKDNSGRQLSEVFIQLPSRKELPEY
YELIRKPVDFRKIKERIRIHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVF
TSVRQKIEKEEDSDGEESEEEEEELDEGSESESRSVKVKIKLSRKEKALEKGKGRRRTGR
GSRPKPVVSDDDSEEEQEEEHSPSGSEED
NT seq
4950 nt
NT seq
+upstream
nt +downstream
nt
atgtccactccggacccccccatgggagggacccctcggcctggcccttctccaggcccc
ggtccgtctccaggtgctatgttgggtccaagcccaggaccttcacctgggtctgctcat
ggtatgatgggccccagcccgggaccaccacctacaggacacaacctacctccacagggg
ccctcaggataccctcaggaaaatatgcatcagatgcacaaacctatggagggcatgcat
gagaagggcatgccagatgaccctcgctacagccagatgaagggcatgggcatgagacag
ggtggccacagtggtatgggacctccacccagccccatggaccaacattctcaaggttat
ccctcccctcttggtggctctgaacatgctcccagtccggtgcctgctaatggccctcct
tctgggccgatgatgccgtctggccctggaggtttacccatggagggcggtgaccctcag
aatatgggccagcaaaatcgaggaggtggtgtggcaccgggtccaggcacagggcctaat
ggtggaccagctggtcctagtgtcccaggcggcactggaggtccaacaccattcaaccag
aaccagcttcaccagctccgggcacaaatcatggcatacaagatgctggctcgtgggcag
cctctacctgaccacctgcagattgcagtgcagggcaaacggccagtgccaggaatgcag
ccagtgatgcctaatatgcctcctgcttcaggacctggagctggccctcctggacctgga
ggtcctggcccagctggtcccaattacaacagatcacatggaatggtaggaccaaatatg
cctcccccaggaccatctggagttcccccaggtatgcagggacagcctcccaatggacca
cccaaatcatggccggaagggcccatggtgaacgctgctgctccagctagtgcacctcaa
aagttaatcccaccccagcctaccggtcgcccctctcctgccccaccctctgtaccccca
gctgcatcacccgtcatgcctcctcagacccagtctccaggacagccggctcagccacct
cccatgatgctccatccaaaacagaaccgcatcacacctattcagaaaccgcgtggcctt
gatcctgtggagattctacaggaacgagaatacagactgcaagctcgtatagctcatcgg
atccaagagctagagaatattcctggctccctagctggtgacttgaggaccaaagccact
attgagctgaaggccttgagacttcttaactttcagagacagttgcggcaggatgtggtg
gtgtgtatgcggcgtgatacagccctggagacagcactcaatggcaaagcctacaaacgc
agcaagcgacaatccctgcgtgaggctcgtatcacagaaaaactggagaagcagcagaag
attgagcaagagcgcaaacgtcgtcaaaagcatcaggaatatctaaacagtatcctccag
catgctaaagattttaaggagtaccatcgctcaatgacaggaaagctccagaaggttacc
aaagctgtggccacctaccatgccaacacagagcgtgagcagaaaaaagagaatgagcgc
attgagaaggagagaatgcggaggctcatggcagaagatgaagagggttacaggaagctg
attgatcagaagaaagacaagcgtctggcctacctgttacagcagacagatgagtatgtg
gccaacctcacagaacttgtgcgtgcccataaggcagttcaggccctcaaggagaaaaag
aagaagaagaaaaggaagaagaccgacactggtgacagtggagctccagcactaggtccg
gatggagagcctctggatgagaccagtcagatgagtgacctcccagtgaaagtcattcat
gtggacagtggcaagattctaaccggtgtggatgcccctaaagcaaaccagctggaggcc
tggctggagatgaaccctggttatgaagttgcaccacggtctgacagtgaagacagcggc
tcagatgacgaagagctgatgacacaactcttcacatctccctgttctccactgcaggaa
gaggaagacgaccagacgcaacactctcagccccatgcagatgagaaaaagaaaattcca
gatcctgacagtgaggatgtgtctgagtttgatgtccgtcacattattgagcatgctaag
caggatgtagacgatgagtacagccacactcagtttgctattggcctgcagtcctactac
gctgtggcacatgcggtcactgagaaagtggacagacagtcatctctcctgattaatggg
acacttaaacagtaccagattaaaggtctggagtggcttgtctctctgtataataataat
ctaaatggcattcttgctgatgagatgggcttgggaaaaactatccagaccatcgcactc
attacctacctcatggagtacaaacgtcttaatggacccttcctcattatcgtaccccta
tcgactctgtccaactgggtgtatgagtttgataaatgggcaccatctgtggtcaaagtc
tcctataagggctctcctgccgctcgcaggtcctttgttcccattctacgaagtggcaaa
ttcaatgtgctccttaccacctacgagtacatcatcaaagataagcaagtgctggccaag
cttcgttggaagtacatgattgttgatgagggtcaccgtatgaagaatcaccactgtaag
ctgactcaggttctaaacacacactacctggcccccaggcgtgtgctactgacaggcaca
cctctgcagaataaactgcctgagctctgggccttgctcaacttcctgctgcccactatc
ttcaaaagctgcagcacctttgagcagtggttcaatgcaccatttgccatgactggtgag
aaggttgacctcaatgaggaggagaccattctgatcattcggcgtttacacaaagtgctc
cggcccttcctgctcaggaggcttaagaaagaagtggaagcgcagctgcctgagaaggtt
gagtatgtgatcaagtgtgatatgtcagcactgcagagagtactgtacagacacatgcaa
gctaaaggagtccttctgactgatggctcagagaaagacaagaagggtaaaggtggaacg
aagacactgatgaacacaatcatgcagctgcgaaagatctgtaatcacccatacatgttt
caacatattgaggaatccttctctgagcatctgggctttactggaggcatcgtttcaggg
ccagacttgtaccgagcatctggaaaatttgagcttctggaccgcattcttcccaagctg
cgtgcaaccaaccacaaagtgctgctcttctgtcaaatgacttccctcatgaccatcatg
gaggactatttttcctaccgtaattttaaatacttgcgtctggatggaaccactaaggct
gaggaccgtggcacgctgcttaaaaactttaatgacccttcctttcaatactttgtgttc
ctgctgagtaccagagctggtggcctggggctcaacctgcaatctgctgacactgtcatc
atttttgatagtgactggaatcctcatcaggacttgcaagctcaggatcgtgctcatcgc
attgggcaacagaatgaggtgcgtgttctgcgtctctgcactgtcaacagtgtggaagag
aagatcctggctgctgccaagtacaaattaaacgtggaccagaaggtgatccaggccggt
atgttcgaccagaagtcttctagccatgagcgcagagccttcctgcaggccatcctggag
catgaggaacaggatgagcctcttattatgtttcaggaggaggatgaggtacctgatgat
gaaactgtcaatcaaatgattgctaggagtgaggaggagtttgatcagtttatgcgcatg
gatctcgaccggcgccgtgaagaggcccggaaccccaagcgcaggcctcgtctgatggag
gaagatgagcttcccacctggattatgaaggatgacgcagaagtggaaagactcacatgt
gaggaggaagaggagaagatgttcggtcgtggatcacggcagagaaaagaggtggactac
agtgactcacttactgagaaacaatggctcaaggctatagaagagggcacactggaggag
attgaagaggaagtacggcataagaagacaactcggaagaggaagcgagaccgtgaccta
gacctcccaggcccagccacgcccagctccagtggtcgaggcagagataaagatgatgac
agtaagaagcaaaagaagcggggccgaccgcctgctgagaaactctctcccaatccacca
tccctcaccaagaagatgaagaaaatcgttgatgccgtcattaagtataaggacaacagc
ggaaggcagctgagcgaggtctttatccagcttccctctcgtaaggagctgcccgaatat
tatgagcttatccgcaaacctgtggacttccgcaaaatcaaggaacgcataaggatccat
aaataccgcagtctgaatgacttggagaaagatgtcatgctgctctgccagaacgctcag
acctttaacctggaggggtcactgatctacgaggactccatcgtgctccagtctgtgttc
acaagcgttcggcagaagatcgaaaaggaggaggacagtgacggagaggagagtgaggaa
gaggaagaggagttagacgagggctctgaatctgaatcacgctctgtaaaggtgaagatc
aagctgagccgaaaggaaaaagctcttgagaaagggaaaggcaggcggcgcactggacga
ggctcacgacctaaaccggtagtaagcgatgatgacagtgaagaggagcaggaagaggag
cattctcctagtggaagtgaggaagattaa
DBGET
integrated database retrieval system
