Tachysurus fulvidraco (yellow catfish): 113639684
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Entry
113639684 CDS
T08119
Symbol
ddx5
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113639684 (ddx5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tfd03041
]
113639684 (ddx5)
03009 Ribosome biogenesis [BR:
tfd03009
]
113639684 (ddx5)
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113639684 (ddx5)
Spliceosome [BR:
tfd03041
]
Complex A
U1 snRNP components
U1 related factors
113639684 (ddx5)
Complex B
113639684 (ddx5)
Ribosome biogenesis [BR:
tfd03009
]
Eukaryotic type
Pre-60S particles
Helicases
113639684 (ddx5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
113639684
NCBI-ProteinID:
XP_026997515
LinkDB
All DBs
Position
15:complement(12145217..12150890)
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AA seq
625 aa
AA seq
DB search
MPGYSDRDRSRDRNYGSSYSSGPPRFGGSRGGPPPGKKFGSPGDRLRKKHWNLDELPKFE
KNFYQEHPDIAHRSSQEVEQYRRSKEITVKGRDCPKPTIRFHEANFPSYVMDVINKQNWT
DPTPIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAP
TRELAQQVQQVAVDYGKASRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAG
KTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK
DYVQINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFVETKRRCD
DLTRRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVIN
FDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNFKQAQDLVSVLREANQAINPKLIQMA
EDRGGRSRGGRGGGYRDDRRDRYSGGRRDYNYGQDSRSSDCSYDNGPKKAFSNKTQNGAA
YSNGASNYNGNSNNGFSGAYNGRSNFNGNQAGGFGNQAFQNKQFEANQGTALNGANHNAQ
FPFNPQQQLPLQPMMPFSMPPPNFP
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatattccgacagagaccgcagtcgcgacagaaattatggcagcagttacagc
agtggacccccgcggtttggtggaagtcgaggtggtcctccgcctgggaagaagtttggc
agtccaggagacagactgcgtaagaaacactggaacctggacgagctgcccaaattcgag
aagaacttttaccaagagcacccagatatagcccacagatcatcacaggaagtggagcaa
tacaggaggagcaaagagatcaccgtgaaagggagagactgtcccaagccgacaatcagg
tttcatgaggccaattttccctcctatgttatggacgtgatcaataaacagaactggact
gatccaactccaatccaagctcaggggtggccactggcactaagtggcaaagatatggtt
ggcattgctcagactggatctggaaaaactctttcatatctgcttcctgctattgtgcac
ataaaccaccaaccattcctggagcgtggagatggacctatttgccttgtgttggctccc
actcgtgagttagcccaacaagtccagcaggtcgcagtagactatggaaaagcttctcgt
ctcaagtccacctgtatctatggaggagctcccaaaggaccacagatccgtgacctagag
aggggggttgagatttgcattgcaactccagggaggcttatagacttccttgaagctgga
aagacaaacctgcgcagatgcacatatcttgtcctggatgaggctgacagaatgctggat
atgggatttgaacctcagatccgtaaaatcgttgaccagattaggccagacagacagact
ctgatgtggagtgctacctggcccaaagaggtgcgtcagctggctgaggacttcttgaag
gattatgtccagatcaatgtgggagctctgcagctcagtgccaaccacaacatcctgcag
atagtggatgtatgtaatgatggagagaaagaagacaagttactgcgcctgcttgaggag
atcatgagcgaaaaggagaacaagaccatcatctttgtggaaactaagaggagatgtgat
gacctcacgaggaggatgcgtagggatggatggcctgcgatgggtatacacggagacaaa
agccagcaggagagagactgggtgcttaatgaattcaagtttggtaaagcacctattctc
attgctaccgacgtggcgtcaagaggtctagatgttgaggatgtcaagtttgtgattaat
ttcgattatcccaacaactctgaggactacatccaccgcattggccgcacggcacgcagc
cagaaaaccggaacagcctacaccttcttcacacctaacaactttaaacaagcgcaagac
ctcgtctctgtcctccgtgaagccaaccaggcaatcaatcccaagctcattcagatggca
gaagacagaggaggtcgttcaaggggcggtcgaggtggcgggtatagagacgatcgccgc
gatcgttactctggaggcagacgggactataactacggccaagacagtcgcagcagcgat
tgcagttacgacaacggaccaaagaaagccttcagtaacaagacacagaacggtgcagcg
tacagtaatggggccagtaattacaatggaaacagcaataatggcttcagtggtgcttac
aatggacggtccaactttaatggcaatcaggctggtggttttggaaatcaggctttccag
aacaagcagtttgaagccaaccagggaactgctctgaatggtgcgaaccacaatgcacag
tttcccttcaaccctcagcagcagctgccattacagcccatgatgcccttttccatgccc
cctcctaactttccttag
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