Tachysurus fulvidraco (yellow catfish): 113639994
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Entry
113639994 CDS
T08119
Symbol
cstf3
Name
(RefSeq) cleavage stimulation factor subunit 3
KO
K14408
cleavage stimulation factor subunit 3
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
113639994 (cstf3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113639994 (cstf3)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
113639994 (cstf3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
NRDE-2
TPR_19
TPR_6
TPR_16
DUF2971
Motif
Other DBs
NCBI-GeneID:
113639994
NCBI-ProteinID:
XP_026998140
LinkDB
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Position
13:complement(7405965..7429443)
Genome browser
AA seq
716 aa
AA seq
DB search
MSAEVAPDQAAEYIPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLITQ
FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKE
KMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM
INIEQLWRDYSKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQ
NSPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDVWYEAAQY
LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFSFADYEESRMKYEKVH
SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRSIFKKAREDVRTRHHVYVTAALMEY
YCSKDKSVAFKIFELGLKKYGDIPEYILAYIDYLSHLNEDNNTRVLFERVLTSGSLSPEK
SGEIWARFLSFESNIGDLASILKVERRRFLAFKEEYEGKETALLVDRYKFMDLYPCSTSE
LKALGYKDVSRAKYASMIQEAVVAPSAPTMKDDGDRKPEYPKPDTNQMIPFQPRHLAPPG
LHPVPGGVFPVPPGAVILMKLLPPPNCFTGPFVQVDELIESFRRCNLPETVEAAVELITG
NRSDVPGEGNGPVENHALANKSLKRPNADSDEEEEKGAIAPPVNDIYRARQQKRIR
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcagaagtcgccccagatcaggctgcggagtatattccagaaaaggtgaagaag
gctgagaagaagttggaagaaaacccatatgacctggacgcatggagcatactgattcga
gaagcacagaaccaacctatagataaagcaaggaagacgtatgagagacttatcacgcag
ttcccaagttcgggcagattctggaagctatacattgaagccgagatcaaggctaaaaac
tatgacaaggttgaaaagttgtttcagcgctgcctcatgaaggttctgcacatcgacctg
tggaaatgctacctgtcatacgtccgggaaacgaaaggaaagctgcccagctacaaggaa
aagatggcacaggcgtacgatttcgctctggacaaaataggaatggagatcatgtcatac
cagatttgggtggactatatcaactttctcaaaggagtcgaggcggtgggttcgtacgca
gagaaccagcgcatcacggctgtgaggcgggtctatcagagaggctgcgtcaatcccatg
atcaacattgaacagctttggagggattacagcaaatacgaggagggaattaatatccac
ttagccaaaaagatgattgaagatcggagcagagattacatgaacgctcggagggtcgcc
aaggaatacgaaacggtgatgaaaggtttggaccgaaacgccccctctgtgcccccacaa
aactctccacaagaagcccagcaggtggagatgtggaagaagtacatccagtgggagaag
agcaacccgctacgtacagaagaccaaacactaatcactaaaagagtgatgtttgcctac
gagcagtgccttttagtgctcggccatcatcctgacgtctggtatgaagctgcgcagtat
ctggaacagtccagcaagctgctggcagaaaaaggggacatgaacaacgctaagctgttc
agcgacgaggctgctaacatttacgaacgcgccatttcaactctactgaagaaaaacatg
ctgctgtatttttcttttgccgattatgaggagagtcgaatgaaatatgaaaaagtgcac
agcatatacaaccgcctcctggctatagaggacatcgacccgaccttggtttacatccag
tatatgaagtttgccagaagagcagagggaatcaagtctggtcgctccatctttaagaaa
gccagagaggacgtcaggacacggcatcacgtttacgtcacggccgcgctcatggagtac
tactgcagcaaggacaaatcggtggcatttaagatcttcgagcttggtctaaagaaatac
ggagacatccctgagtatatactggcgtacatcgattacctctctcacctcaatgaggac
aacaacacaagagtgctgttcgagagggttctcacatctggaagtctttctcctgaaaaa
tcaggggagatctgggcacgctttctgtcattcgagagcaacattggagacctggccagt
atcctgaaggtggagcgcaggcgcttcctggcttttaaggaggaatacgagggcaaggag
acggctctgttggtggacaggtacaagttcatggatctgtacccctgctccaccagcgag
ctcaaagctcttggctacaaggacgtatcccgagccaaatacgcctcaatgatccaagag
gctgttgttgccccttctgccccgaccatgaaggatgatggagaccgcaaaccggagtat
cccaaaccagacaccaaccagatgatcccatttcagcctcgacatcttgccccccctggc
ctgcacccggttccaggaggagtgtttcctgtcccccctggtgctgtgatcctcatgaag
ctgctgcctcctccaaactgcttcacaggtccattcgtccaggtggatgagctgatcgag
tcgttcagaagatgcaatctgcctgagactgtagaagctgcagtggagttaatcacagga
aaccgtagtgatgttcccggagagggaaatgggcctgtcgagaaccacgcactagctaac
aaatcactgaagaggccgaacgctgattcagacgaggaggaggaaaaaggagccatcgct
ccaccggtcaacgatatctaccgtgcaaggcagcagaagcgcatccgatga
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