Tachysurus fulvidraco (yellow catfish): 113640063
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Entry
113640063 CDS
T08119
Symbol
whrna
Name
(RefSeq) whirlin isoform X1
KO
K21879
whirlin
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tfd03037
]
113640063 (whrna)
Cilium and associated proteins [BR:
tfd03037
]
Primary cilia and associated proteins
USH complex and associated proteins
113640063 (whrna)
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Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
USH1C_N
T15H9-4_C
HHD_RTEL1
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
113640063
NCBI-ProteinID:
XP_026998201
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All DBs
Position
21:complement(17542791..17635094)
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AA seq
928 aa
AA seq
DB search
MSADLERVSLSSSSAGSLASSARSLSANVRKLHDALNLLLSELEREQFVHCLNVYHAKRN
VYDLVQTLKVILDAPSKRQLLPMLRLVIPRSDQLLFDRYTSEGLYLKSDLLPSRNGEHET
SVSGSANNATLTRLPLRSSPDHQSAGSDGTSTALVPLLGRHFLPEPPGEVRQVTLKRHKS
NEGLGFSIRGGSEHGVGIFVSLVEPGSMAEKEGLRVGDQILKVNDKVFDRFTHAEAVKVL
KGNKKLCMSVRSMGRIPGGYVTNHVYTWVDPHGRSVSPPPDLMEHHSATLNRNQGKQRSH
MQLLEDGDEKKVNLVLDDGRSLGLMIRGGAEYALGIYITGVDRGSAAECGGLKVGDQILE
VNGRSFLSIPHDEAVRMLKSSRHLMMTVKDVGRLPHARTVVGETKWIASSQITDSSASSS
VAGLSMDQGASASGKMGFYKGVAGSQVTLSSLVNQSKAMLEEQARHLLTEPERQTMSYYI
QEYNRGHVGVEQLVMALFELLNTQAKFSLMSEMRGLISAQDLERFDALVLRKEIEALKAR
QGAAGGSALHTDSFSMVSYPDTLASSSGSYMTSTTLSSARERLLWLIDMMENDSAVETNG
EDALESRNALPDVSLDEMGSTSESPPSFKPPPPPRVQRRPSRKPAPSKRPTSDSSNSDLH
FTAHSHSPTKDYTQSKQPSGGPKKEPPLAQLSMVSQHLIGPFPRVQSPNRLKPPPAPAVP
APLAPPLPPSPEKPKTTPSSPSSNQHFVMVEVHRPNAEPDVNEVRPLPQSRGSTLSQLSD
SGQTLSEDSGVDIAESGRMSKESSPRPTRTRPLRESAGGGEGSTVKPPGLLEPMSTLVRV
PKSANTLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGQVILEVNGISLRGREHRE
AACLIAEAFKTKEKEYIDFLITEFNVAL
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcggacctggagcgcgtgtcgctgagctcctcgtctgcgggctcgttggcttcc
agcgcgcgctcgctctccgctaacgtgcgcaagctgcacgatgcgctcaatttgctgctc
agtgaactcgagcgcgagcagttcgtgcactgcttgaacgtgtaccacgctaagcggaac
gtctacgacttggtccagacgctcaaagttatccttgacgccccgagcaagcgacagctg
cttcctatgctgcgcctggtcatcccgcgctccgatcagctcctgtttgatcgctacacc
tccgagggactgtatttaaagtcggatttgctgccgagtagaaacggggagcacgagacc
tccgtgtccggctctgcgaataacgctacgctcacgcgtttacctctgcgcagttcccct
gatcaccagagcgccggcagcgacgggacatctactgcgctcgtgccgctactgggcaga
catttcctacctgaacccccaggtgaggtcagacaggtgacactcaagcgccacaaaagc
aacgagggtttaggcttcagcatccgtggtggatccgagcatggggtcgggatcttcgtg
tctctcgtggaaccgggatccatggctgagaaagagggactaagagtcggtgatcagatc
ctcaaagtgaacgataaagtgttcgacaggttcacacatgccgaggctgtgaaggtactg
aagggcaataagaagttgtgcatgtcagtgcgctccatgggtcgcatcccaggcggttat
gtcacaaatcacgtgtacacgtgggtggacccgcacggccggagcgtctctcctccccca
gacctgatggagcaccacagcgctaccctgaacagaaaccagggcaaacagcgcagccac
atgcagctgctggaagacggagatgagaagaaggtgaatctggtgctggatgatggtcgt
tctctgggtctgatgatccgtggtggagccgaatacgctctggggatctacatcaccgga
gttgacagaggttctgcagcagagtgtggagggctgaaggtgggagatcagattctggag
gtgaacgggcggagcttcctgagcattcctcacgacgaggcagtgcgcatgctcaagtct
tcacgccacctcatgatgaccgtgaaagatgtgggacgactgcctcacgcccgcaccgtg
gtaggagagaccaagtggattgccagttcccagatcacagacagctcggccagcagcagt
gtagcaggtctttctatggatcaaggggcttcagcctcaggaaagatgggtttttataaa
ggagtagccggctctcaggtgactctctccagtctggtgaaccagagtaaggccatgctg
gaggaacaggccagacaccttctgactgaacctgagagacaaaccatgagctactacatc
caggaatataacagaggacacgttggagtcgagcagctggtcatggccctctttgagctt
ctcaacacacaggccaagttctcccttatgtctgagatgcgggggctgatcagcgcacag
gatctggagcgttttgatgcacttgtgctccgcaaggagattgaagctctgaaggctcga
cagggagcagcaggaggttcagcacttcacacagactccttctcaatggtttcctaccca
gacacactggcctcctcctcaggcagctacatgaccagcaccacactcagctctgcacgg
gagcgactgctgtggttgattgatatgatggagaatgacagcgcggtggagactaatgga
gaagacgccctggagagtagaaacgcccttccagacgtctctctggatgagatggggtca
acttcagaatccccaccttccttcaagccccctcctccccctcgcgtacagcgccgcccc
agtcgtaaacccgcccctagcaaacgccccacgtccgactcctctaactctgacctgcac
ttcaccgcccattcccactcacctaccaaagactacacacaatccaaacagccttcgggt
ggcccaaagaaagagcctccattggctcagctctccatggtgagtcagcacttgatcggt
cctttcccacgtgttcagtcccccaacaggttgaaacccccgccagcacctgcagtccca
gctccccttgcacctcctctgcccccgagtccagaaaaacccaaaaccacaccctcctcc
ccatcctccaaccagcactttgtcatggtggaggttcacaggcccaacgcagagcctgac
gtcaacgaggtcagaccacttcctcagagcagagggtccacactgtctcagctctctgac
agcggacagacgctgagcgaggacagcggcgtggacatcgcagagtcgggacgcatgagc
aaggaaagcagtccacgtcctacccgaactcggccactgagagagagtgcagggggaggg
gaggggagcactgttaaaccgcccggcctgctggaacccatgtcaactctggtgcgagtg
ccgaagagcgccaacacgctgggtatcgctattgaaggaggagccaacacacgccagcct
cttccgcgcatcgtcaccatacaaagaggaggctcggctcataactgcgggcagctgaag
gtgggccaggtgattctggaggtgaatgggatctctctgagaggacgagaacatcgagaa
gcagcctgcctcatcgcagaggccttcaagaccaaagagaaggaatacattgacttcctc
attacggagttcaatgtggcgttgtaa
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