Tachysurus fulvidraco (yellow catfish): 113640290
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Entry
113640290 CDS
T08119
Symbol
palb2
Name
(RefSeq) partner and localizer of BRCA2 isoform X1
KO
K10897
partner and localizer of BRCA2
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03440
Homologous recombination
tfd03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
113640290 (palb2)
03460 Fanconi anemia pathway
113640290 (palb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tfd03400
]
113640290 (palb2)
DNA repair and recombination proteins [BR:
tfd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
113640290 (palb2)
FA (Fanconi anemia) pathway
Downstream FA components
113640290 (palb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PALB2_WD40
Bap31_Bap29_C
Motif
Other DBs
NCBI-GeneID:
113640290
NCBI-ProteinID:
XP_026998509
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All DBs
Position
18:799850..807308
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AA seq
1156 aa
AA seq
DB search
MSQESLTSQDKEELKRRLELLQKEYDRTAQRLQRAERREVVRKHVQSRISEQKRLLHINT
SVMLEQSSSSSLEQLSNCSVSSDTTRVHFHLPAVSPFSTQTCKRSPSRSHRLRSKCSLLR
LQIRERESDTEERQDKTREGTGEMWQEEQRQIESEHEWIPEEKDMTKGQTEEERSQKEEC
SEQTEMLKDALEKDVENLTPENEQLVTESFSVNQSPLTKLLETHNPPADQSAVRNSPSTS
SDHSIPSNETSSQSCSIYNAEKSPESSDFLTSCTLIEGLPFPVEYYVRTTRRMASAHSSV
DLNAVIQSQLSNGRGRRRASRGRVASQTLSEKPEKSVSRRRGQRGRRGRKRDRESDLSGQ
SESLVISQSSLPQEESEPTRSTKPNSDPAKESQLNCELSTDSQVYPIFRKKCERTGVSRS
QMSTSFGSSQLLTSLTSLTQALRTKDFQNLSGLLTIFDVQDFHLPDDEFGQLKLERLCSS
CPNFNTLTYGTRFRKNRSTNNPEGGQGDNKKVVLDSLPHGASLESRLPLMFTAQSQVEVE
NTNQSVSEITSQTLDKMQEPVGLLHRSATNQTETQQNREAEKHTEQITSNDPLTLSASRS
LMLNLSMSLTSLTQSDHNTSLISLGVTPNLLTVSPSSQLTHFISMPSPPDQDDASKQSEE
EQNNGTCENINTEASDLLISPQVQLQGCEHTYSKSYSSDGSKMDVETPEPVIKSEVEIPE
CGISDVKGEMEVKLIAQERNAEGQQTESQPQIVFTHSQNEDADELHSISDLEFHSISRTS
QCLDIGNVLNNETSALPGVAANQREDSEVTLSLDLVQTSQTSSGSLRKTHTLKALDGGCV
LDVCLLRWSSSDWLVCVAGEWSVCVWKQNDGDQQWRRLYTWTFTQSVISLQGIPDSSALL
CVCLGRLEITEARILYCQFTDSEFSQFELYKGALQAVLAVSDHRVTCCSAKGAHQNVQVF
TLSQDGRIAETLSLVPTYEPIQTLVMVERETDALIGWTEHRSFLIWNMKSGQLLQTVRLT
ESVSTATCLRGYSYRGVLCVLLQQASSCHEETGCTLFTLIAINPLTGKYFSLSSITSPSS
PSERLVDADVCESALVGVFQSGLTIWNLTGGVACVYANESVEWCRLARWAGPNTLLTGYL
NGDVHIYQFSTTDIRR
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggaaagtctaacgagccaagataaagaagaactgaagaggcgactggagctg
ctgcagaaagagtatgacagaacggcccagagattacagcgtgctgagcggagggaggtg
gtacgtaagcatgtccagagcagaatctccgagcagaagcgactgctgcacatcaacacc
tctgtcatgttggaacaaagctcttcttcctccctggagcagctttctaactgcagtgtt
tcttcagacaccactagagttcatttccatttacctgccgtctctccgttttccacccag
acgtgtaaacgaagcccatctcggtctcatcgtctccgctccaagtgcagccttctgcgt
ctgcagatcagggagagagagtctgatactgaagagcgtcaagacaagacaagggaggga
acgggggagatgtggcaggaagagcaaagacagatagagagtgagcatgagtggatcccc
gaggagaaggacatgacgaaaggacagaccgaagaggaaagaagtcagaaggaggagtgt
agcgagcagacagaaatgttgaaggacgctttggaaaaagatgtagaaaacttgacacca
gaaaatgaacaattagtaacagagagtttttctgtcaaccaatcacctctaacgaagttg
ttagaaactcacaaccctcctgctgatcagtcagctgtaagaaactccccatcaacctcc
agtgatcattccatcccatctaatgaaacatctagtcagtcctgctccatttacaatgca
gagaaaagtccagaaagctcagatttcttaacatcctgcaccctaattgaaggtttgcca
tttcccgttgagtattacgttcgtaccaccaggagaatggcgtcggctcacagctctgtg
gatctgaatgctgtgatccagagtcagctttcaaacgggcggggcagacgaagggcaagc
agaggtcgtgttgcctcacagactttgtctgaaaaacctgaaaaaagtgtcagtagaaga
cgtggtcaaagagggcggcgaggacgcaagagagaccgtgagtctgatctgtctggtcag
tccgaatccctcgtcatatcccagtcttcccttccgcaggaagagtcggagccaacacga
tcaaccaaacccaactcagaccctgctaaggagtctcaactcaactgtgagctctccaca
gattcacaagtctatccaattttcaggaagaagtgcgaacggaccggtgtgtctcgttct
caaatgtctacaagctttggttcgtctcaactcctgacctcattaacgtctctcacgcag
gctctgagaacaaaagatttccaaaacctcagcggtctgctaacgatatttgacgtgcaa
gactttcaccttcctgacgatgagtttggccagctgaaactggagcgactttgctcatcc
tgccccaactttaacacgctcacgtacggcacacggttcagaaagaacaggagcacgaac
aatcctgaaggtggacagggggataataagaaagttgttttggactcattaccacacggt
gcttcgttagaaagtcgtcttcctttgatgtttactgcgcagtcacaggtggaggtggag
aacaccaaccagtcagtaagtgagattacaagccaaactctggataagatgcaagaacct
gtaggtcttttacacagatctgccacaaaccaaacagaaacacagcagaacagagaagct
gaaaaacacacggagcaaatcacgtcaaatgatcctctaacactctccgctagcaggagt
ttaatgctaaaccttagcatgtccttgacatcactgacccagagtgatcacaatacctct
ctcatctctctgggagtgacccctaacctgttaaccgtgtctccttcctcacagctcaca
catttcatctccatgccttcgcctcctgatcaggatgatgcttcaaaacaatctgaggag
gaacagaataacggaacatgtgaaaacattaacacagaagcgagcgaccttttaataagc
cctcaagtgcagctacaggggtgtgagcatacttacagcaagagttatagttctgatggc
tctaaaatggacgttgagacacctgaaccagtgataaagtctgaagtggagataccagag
tgtggcatttctgatgtaaaaggtgagatggaggtgaaactcatagcacaagaaagaaat
gcagaaggtcagcaaactgagagccagcctcaaatagtttttactcattctcaaaatgaa
gatgctgatgaacttcactccatctctgacctggaatttcattcaataagcagaacgtca
cagtgtctagatattggcaacgtgttaaacaatgagacctcagcacttcctggtgttgca
gccaatcagagagaagatagcgaggttactttatctttggatttagttcaaaccagtcaa
acatccagtggatctctccggaaaactcatacactgaaggcgctggatggagggtgcgtg
ttggatgtgtgtttattgcggtggtcatcttctgattggcttgtgtgtgtggccggagag
tggagtgtgtgtgtttggaagcagaatgatggagaccagcagtggagacgtctgtacact
tggacctttacacaatcggtgatctctcttcaggggattcctgactcttcagctctgctg
tgtgtgtgtttggggaggctggagatcacagaggcaaggatactgtactgccaatttaca
gacagtgagttctctcagtttgagctgtataaaggagctctgcaggctgtactcgctgtg
tcggatcacagggtgacgtgttgttctgctaagggagctcatcaaaatgtccaggtgttt
acactttctcaggatggcaggattgcagagactctgtccctggtccctacttatgaaccc
attcaaaccctggtcatggtggagagggaaacagatgctctgattggttggacagaacac
aggagtttcctcatatggaacatgaaatccggccagttgcttcagacagttcgtctgacg
gagagtgtttccacggcaacctgtctgagaggatattcctacaggggtgtgctgtgtgtg
ttactacagcaggcgagttcatgccatgaagaaactggttgcacattatttactctgatt
gccataaatcctctcacaggaaaatatttcagtctgagcagcatcacctccccatcatct
ccctcagagcggttggtagacgctgatgtgtgtgaatctgcacttgtgggtgttttccaa
tcaggtctgactatatggaacctcacagggggcgtggcctgtgtgtatgcaaatgagtct
gttgaatggtgccgcctggcacggtgggcggggccaaacacactccttacaggttacctg
aacggggacgttcatatttatcagttcagtactactgatattaggagatga
DBGET
integrated database retrieval system
