Tachysurus fulvidraco (yellow catfish): 113640798
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Entry
113640798 CDS
T08119
Symbol
trim25l
Name
(RefSeq) tripartite motif-containing protein 16 isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
113640798 (trim25l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tfd04121
]
113640798 (trim25l)
Enzymes [BR:
tfd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
113640798 (trim25l)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
113640798 (trim25l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_3
ANCHR-like_BBOX
zf-C3HC4_2
RING_XB3-XBAT31
zf-RING_2
zf-UBP_var
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
113640798
NCBI-ProteinID:
XP_047669740
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All DBs
Position
5:5996340..6011341
Genome browser
AA seq
886 aa
AA seq
DB search
MSKGRLWTEEQFNCPVCLDLPHEPVTIPCGHSYCMACITDYWDSERRKSGSCSCPECRQT
FDPRPTLCRNTMLAEAVEQLRVGNLSSTARESIRNAHRAADSASARGAQERKAVTKQLPA
SSVPCDRCMEPRAAVKTCLTCMASFCESHMKPHQTQAKLKSHELIAPTGDLTQKICPEHK
YLQEFYCRSCQVYICWLCTSNQHKDHETLSTQAERTEKQKTILTVQAENLQKLHEREKEL
KDMKKVLETLKLSSESVSEETDKVLCELQHSVQRMADLIQQVMSSTGQEKISEAQQLVDK
LEKEISQLRKKDSDLKELVTCQDNIYFLKTYQCLCSPEFSELGSFTVNLDASFDPVKIVI
SDLREKVENVCNQELDKINKTVFIVMPYTVIDRQSGQKPGILKLFSGIGGKSSSSRSQAG
PPPLPSVSARGPVDRGTNSPRPRASYNREEREQANNRSVSSLRSSERQRREEREQERETP
NSPRSQSRSTNHQEADSWSIRSLRQSTQARENQEQADTWSLSSVRSRGRPGREERETANG
EMQSSQRPQETVMSRQQPERQSDTWSLSSIRSTRGRERREERETANAESQSSTRSQQTAT
TRQQPERQSDRWSLSSLLPKNRKKRQESVKQATPIQQEIVSPQDQWGQQTEVNPGLFLDS
PSADSSFSRTYSLREIDIDSIQAPEPRSRDEFLQYACELTFDPNTAHRRLVLSEDDTKAT
LNTTTQSYPDVPERFDSWTQILSLQPLSSARCYWEVEWRGRGSSVGVASASMPRKGADAR
AGLGYNNQSWSLELSDMCCAAMHANQKQEISVTYCPRVGLFLNQESSSLAFYGVDDVLVH
LHTFHGVSSSQPLFAAYGVGSGVGVGLDFAMGNFSASTDSIKICTI
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaggtcgtctgtggacggaggagcagtttaactgccccgtttgtctcgacttg
ccgcatgagcccgtgacgatcccgtgcggtcacagctactgcatggcgtgcatcaccgac
tactgggactctgagcgcagaaagagcggctcatgcagctgccctgaatgtcgccagacc
ttcgaccctcgtccaacgctgtgccgtaacactatgctcgcggaggccgtggagcagctc
cgcgtaggaaacctcagctccacagcacgcgagtccatccgtaacgcgcaccgtgcagcc
gactctgcgtccgcgcgtggtgcgcaagagcgaaaagccgtcaccaaacagcttcctgcc
tcgagtgtgccgtgtgaccggtgcatggagccgagagcggccgtgaaaacctgcctgacg
tgtatggcgtccttctgcgagagccacatgaagccgcaccagacgcaggccaagctaaag
agccacgagctcatcgcgcccaccggagacctgacgcagaagatctgccccgagcacaag
tacctgcaggagttctactgccgctcgtgccaagtctatatctgctggctgtgcacgagc
aaccagcacaaagaccacgagaccttgtctactcaggcggagcgcacagagaaacagaaa
accattttaacagttcaggcagagaatctgcagaagctgcatgagagagagaaggaactc
aaagacatgaagaaagtcctggagaccctcaagctttcatccgagtcagtgagcgaggag
acagacaaggtgctctgtgagcttcagcactcagtgcagcgtatggcagatctgatccag
caggtgatgagctctactgggcaagagaagatcagcgaggcccagcagctggtggacaaa
ctggagaaggagatcagtcagctgaggaagaaagactctgatttaaaagagcttgtgaca
tgtcaggacaatatctactttctcaagacgtatcagtgtctttgttctccagagttcagt
gaactcggcagttttacggtgaatctggacgcctcgttcgatcctgttaaaatcgtcatt
tcggatctcagggagaaagtggagaacgtgtgcaaccaagaactggataaaattaataag
acagtgttcatcgtgatgccgtacactgtgatcgaccgacagagtggacagaagccgggc
attttgaaattgttttctggaattggaggaaaatcctcaagtagtcgctcgcaagcaggt
ccccctccgctgccctctgtgagtgcccgaggcccagtggatagaggcacaaattcccca
agaccaagagcaagctacaacagagaggagagagagcaagctaataaccggagtgtgagc
tctctgagatcaagtgagaggcagagaagagaggagagagagcaagagagggagactcca
aactcaccgagatctcaaagcaggagcacaaatcatcaagaagccgactcctggagtata
cgctctctacggcagtcgacacaggcgagagaaaaccaggaacaagctgacacctggagc
ttaagttcagtcaggtccaggggaaggccggggagagaggagagagagacagctaacgga
gaaatgcagagttcccagagaccgcaggagacagtgatgagcagacagcaaccggagagg
cagtctgacacctggagcttaagttccatcaggtcgacgagaggcagagagaggagagaa
gagagagagacagctaatgcagagtcacagagctccaccaggagccagcagacggcaacc
accagacagcagcctgaaagacaatctgatcgctggagtctgagctcactgttaccaaaa
aacaggaagaagagacaagagtcagtgaaacaagccacacctattcaacaggaaatagtg
tctcctcaggatcagtggggacagcagaccgaagtaaaccctggacttttcctggactct
ccatcagcagactcttcattcagtcgtacctattcactgagagagatcgatattgacagc
attcaggctcctgagccgaggagcagagacgagttcctgcagtatgcctgtgagttgaca
tttgatcccaacacggcacacaggcgattagttctcagtgaagacgacaccaaagcaaca
ctcaatactaccacccaatcgtaccctgatgtccctgagagatttgacagctggactcag
attctcagcctccagccactcagctctgcacgctgctactgggaggtggagtggcgtgga
cggggctcttcggtgggtgtggccagtgcttccatgccacgtaaaggtgcagacgcaagg
gcgggtcttggctacaacaaccaatcctggagtttggagttgtcagacatgtgctgcgcc
gctatgcacgccaatcagaagcaggagatctcagtgacgtactgcccccgagtaggcttg
tttctgaaccaggagtcgtcgtctctggctttctatggtgttgatgatgtactcgtgcat
ctgcatacattccacggtgtctcatccagtcagccactgttcgccgcttacggtgttggg
agcggagtgggagttggcctagactttgccatggggaacttcagcgcttctacagacagc
attaaaatctgcacaatttaa
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