Tachysurus fulvidraco (yellow catfish): 113640853
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Entry
113640853 CDS
T08119
Symbol
rc3h2
Name
(RefSeq) roquin-2
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tfd03000
]
113640853 (rc3h2)
04121 Ubiquitin system [BR:
tfd04121
]
113640853 (rc3h2)
Transcription factors [BR:
tfd03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
113640853 (rc3h2)
Ubiquitin system [BR:
tfd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
113640853 (rc3h2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-CCCH_4
Prok-RING_4
zf_CCCH_4
zf-C3HC4
zf-RING_10
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
113640853
NCBI-ProteinID:
XP_047660785
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All DBs
Position
20:20871865..20902924
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AA seq
1034 aa
AA seq
DB search
MPVQAAQWTEFLSCPICLNEFNAGGHKPISLGCSHTVCKTCLHKLHRKACPFDQTSISID
IELLPVNRALLLLLGAQVPESQSVFLGSTEDAQHYEICRTCVEELALYLKPITGGKGVVS
QIGSALSRPMQRKLVTLVNCQLVEEEGRVRALRAARSLGERTITELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEARFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDAQIVHIAMEAGLRISPEQW
SSLLYGDLAHKSHMQSIIDKLQSPESFVKSVQELTIVLQRTGDPANLNILRAPLELLAGI
DQNLDSAVPSWEELQSVMLAAKLVVHGLVEFIQNFSKKSHETFPSQPNSKYKTSMCRDLR
QQGTCPRGINCTFAHTQDELEKYRMRNKKVSSGTRPSLLSKTGGVKSSGVDVCISEQEGV
ASESSSPTHLVPRGGEQEQEEVMMKELADGFRATNQDLKTGSPPKSPVSGGSADPSVLLK
SSSLPQRAHHEVPYFPEQRSAYDLPSCPSGNYFPAPVSNSHKHYLPRFPRSSPASDSSAT
PPLAPPYPDQHLQSRLGLSPYPASHSYPPLPHTHPHGHGVYAPVYDSRRLWRPQLYHRQD
GRSNSLPLEVLHSSIYHPPLRERFNSLDSAYCSASNRRAALHREACGRAALGSEDFYTLR
QDQWSHQHHGSGRVAQQSPVFTVDLCSERVDSGVCVSCKCGGADTPLGRYSPWSCGAVGP
FDSEPLYSHTCSQHMDGECTAKRWLQVSEPYRRVKDEDPIIPFGEGPIISKWGAISRSSR
TDHHTTEPVQATATHGRTATTTLINFRDYNSHATPGECQWSLCGFESTRSGFLGSEQRRS
SFSTAGKHRAEFLVGDGTESDPNRDIELELCALHVDDLEPAGIQSEVSLEPRCEHHLSGV
FGDAGGSSRTAQSLPEHMDAHLLKKMAFRKSLSPGGLNAGGLTAGSLVMKTGSPRHPGDS
TGPNPGPEMILNGS
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgcaggcggcgcagtggacagagttcctgtcctgccccatctgcctgaacgag
ttcaacgctggtggacacaaacccatcagcctgggctgctcccacaccgtgtgtaagacg
tgtctccacaaactacaccgtaaagcatgtccttttgaccagacctccatcagcatcgac
atcgagctgctgccagttaatcgtgccctgctgctgctgttgggggcgcaggttcctgaa
agccagagtgtgtttctgggcagcactgaagacgcacagcattatgaaatatgcaggacg
tgtgtggaggaattggcactttacctcaaacccatcactgggggaaaaggcgtggtgtct
cagattgggagtgcgctcagtcggcccatgcagaggaagctggtgacgctggtgaactgc
cagctggtggaggaggagggccgggtgagggcgctgcgggcggctcgctctctgggagaa
cgtaccatcaccgagctcatcctgcagcaccagaaccctcagcagctctccgccaacctg
tgggccgccgtcagggcgcgtgggtgtcagttcctcggacctgcgatgcaggaggacgcc
ctgaagcttgtcctgctggctctcgaggacggctcggccctctctcgcaaggttctggtg
ctctttgtggtgcagaagctggaagctcggttccctcaagcctccaagacgagcatcggt
cacgtggtgcagcttctgtaccgcgcctcctgctttaaggtgacgaagcgtgacgaagac
tcctcactgatgcagctgaaggaggagtttcgcacctacgaggctctgagacgtgaacac
gatgctcagattgtccatatcgccatggaggcggggctacgcatctctcccgagcagtgg
tcctctctgctgtacggagacctcgcccacaagtcacacatgcagtccatcatagacaag
cttcagtccccagaatcctttgtgaagagcgttcaggagctgacgatcgtcctgcagaga
accggagacccggcaaacctcaacatcctccgagctccgctagaacttctggctggaatt
gaccagaacctggactcagccgtcccctcgtgggaggagctccagtcagtgatgttggcg
gcgaagctggtggtccacgggctcgttgaattcattcagaattttagcaaaaagagccac
gagacctttccttctcagcccaatagtaaatacaagaccagcatgtgcagagacctgcgg
cagcaaggaacctgcccacgaggtatcaactgcaccttcgcccacacccaggacgagctg
gagaagtaccgaatgaggaacaagaaggtcagttcaggaaccagaccgtctctcctgtcc
aaaacgggaggcgtgaaatcctcaggtgtagacgtgtgtatctctgagcaggagggcgtg
gcctccgagagctcctcccccactcacctcgtgcccagaggaggagagcaggagcaggag
gaggtgatgatgaaggagctggctgatggattcagagctaccaaccaagacctgaaaaca
ggttctcctcctaagagcccagtgtcaggaggttctgcagacccctcagtgctcctcaaa
tcttctagtctaccacagagagctcaccacgaggtcccctactttcctgagcagagatct
gcgtacgacttgccgtcctgcccgtctggtaattatttccctgctcctgtgtcaaactct
cacaaacattacttacctcgcttccctcgctcaagccccgcctccgactcatcggccacg
cctcctctggctccgccctaccctgaccagcacctccaatctcgtttgggtctgtctcca
tatcccgcctctcactcttacccgcccctccctcacactcacccccacggtcacggcgtc
tacgctcccgtctacgacagccgacgtctctggcggcctcagctgtaccacagacaggac
ggccggagcaactccctccctctggaggtgctgcactcgtccatctatcatccccctctc
cgtgaacgcttcaactctctcgacagcgcctactgcagcgcctccaacaggagagccgcc
ctgcacagggaggcgtgtggccgagctgctttgggctctgaggatttctacactctccgg
caggatcagtggtcacatcaacaccacggctcaggccgagtggcacagcagtcccccgtc
tttactgtggatctctgctctgagcgcgtggacagtggggtgtgtgtgagctgtaaatgt
ggaggtgcagacacgccgctcggtcgttactcgccgtggtcatgtggcgccgtcgggccg
ttcgactctgaacctctttattctcacacctgttcccaacacatggacggtgagtgtaca
gctaaacgctggctgcaggtctcagagccgtacagacgtgtgaaggacgaggaccccatc
atcccgttcggagaaggtcccatcatctcaaagtggggagcaatttcccgctcatctcgc
acagaccatcacaccactgagcctgtgcaggccacagcgacacacggacgcacagccacc
accacgctcatcaacttcagagattacaactctcatgccacaccgggcgagtgccagtgg
agtctgtgtgggtttgagtcgactcgctcggggttcctaggaagtgagcagagacgcagc
tccttcagcaccgccgggaaacaccgagccgagttcctggttggagacggaacagagagc
gacccgaaccgggacattgagctggagctttgtgctctacacgtggacgacttggaacca
gcagggatccagtcagaggtatctttggagcctcggtgtgaacatcacctctcgggtgtg
ttcggcgatgcgggcggaagctcacggacagcacagtcgttacctgagcacatggacgca
catttactgaagaagatggcctttaggaagtccctctcccccgggggcctgaacgctgga
ggtctcaccgcggggagtctggtgatgaagacgggttcaccgagacatccaggagactcc
accggaccgaaccctggacctgagatgattctgaatgggagctaa
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