KEGG   Tachysurus fulvidraco (yellow catfish): 113641064
Entry
113641064         CDS       T08119                                 
Symbol
rab5b
Name
(RefSeq) ras-related protein Rab-5B
  KO
K07888  Ras-related protein Rab-5B
Organism
tfd  Tachysurus fulvidraco (yellow catfish)
Pathway
tfd04137  Mitophagy - animal
tfd04144  Endocytosis
tfd04145  Phagosome
tfd04148  Efferocytosis
tfd05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:tfd00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    113641064 (rab5b)
   04145 Phagosome
    113641064 (rab5b)
   04137 Mitophagy - animal
    113641064 (rab5b)
   04148 Efferocytosis
    113641064 (rab5b)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    113641064 (rab5b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tfd04131]
    113641064 (rab5b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tfd04147]
    113641064 (rab5b)
   04031 GTP-binding proteins [BR:tfd04031]
    113641064 (rab5b)
Membrane trafficking [BR:tfd04131]
 Endocytosis
  Rab GTPases and associated proteins
   Rab GTPases
    113641064 (rab5b)
 Endosome - Lysosome transport
    113641064 (rab5b)
Exosome [BR:tfd04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   113641064 (rab5b)
  Exosomal proteins of other body fluids (saliva and urine)
   113641064 (rab5b)
  Exosomal proteins of colorectal cancer cells
   113641064 (rab5b)
  Exosomal proteins of melanoma cells
   113641064 (rab5b)
GTP-binding proteins [BR:tfd04031]
 Small (monomeric) G-proteins
  Rab Family
   Rab5/17/22/31 [OT]
    113641064 (rab5b)
SSDB
Motif
Pfam: Ras Roc Arf GTP_EFTU Gtr1_RagA RsgA_GTPase MMR_HSR1 SDR-like AAA_16 Tfb2_C
Other DBs
NCBI-GeneID: 113641064
NCBI-ProteinID: XP_026999458
LinkDB
Position
6:24693914..24703644
AA seq 214 aa
MTTRGNARTNGNLPQTKICQFKLVLLGDMAVGKSSLVLRFVKGQFDEFQETTIGAAFLAQ
SVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVFDITKPETFERAKAWVKELQR
QASPNIVIALAGNKSDLADKRLVEYEEAQTYAEDTGLLFMETSAKTAMNVNELFLAIAKK
MPKTDTQNPTHAARHRGVNLQDPDAQSSRSCCGN
NT seq 645 nt   +upstreamnt  +downstreamnt
atgaccacccgtgggaacgctaggaccaacgggaaccttccccagaccaagatctgccag
tttaagttggtgctgctgggagacatggcagtgggcaagtccagcctggtccttcgcttc
gtcaagggccagtttgatgagttccaggaaaccaccattggagctgctttcttggctcag
tcagtttgcctggacgacacgacggtgaagtttgagatttgggacacagctggacaggaa
cgctaccacagcctggcacctatgtactaccgcggagcccaagcagccatcgtagtgttt
gatattacaaaaccggagacgtttgagcgagcgaaggcctgggtgaaggaactccagagg
caggccagtcccaacatcgttattgcactggcaggaaacaagtcagacctcgctgacaag
agactggtggagtacgaggaagctcagacgtacgctgaagacacaggattgttgttcatg
gagacttctgccaagactgctatgaacgtgaatgagttattcctggccattgcgaagaag
atgccgaaaacagacactcagaacccgacgcacgccgcccgacacaggggagtcaactta
caggacccagacgcccaatccagcaggagctgctgcgggaactag

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