Tachysurus fulvidraco (yellow catfish): 113641263
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Entry
113641263 CDS
T08119
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113641263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113641263
03036 Chromosome and associated proteins [BR:
tfd03036
]
113641263
Enzymes [BR:
tfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113641263
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
113641263
mRNA degradation factors
5'-3' decay
Decapping complex
113641263
Chromosome and associated proteins [BR:
tfd03036
]
Eukaryotic type
Gene silencing
piRNA pathway
113641263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
113641263
NCBI-ProteinID:
XP_026999655
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All DBs
Position
7:12265297..12277093
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AA seq
478 aa
AA seq
DB search
MATAKMENVGAVVMGLGKQNGQLRGLSSQSGTAIQSNPFARGPKPAADSQEGPGIRFGED
WKKSLQLPPKDNRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESIPIAL
SGRDILARAKNGTGKSGAYLIPMLERIDLKKEYIQALVMVPTRELALQVSQISIQLSKHL
HGLKVMATTGGTNLRDDIMRLDEIVHVVIATPGRILDLIKKGVAKVDKVQIMVMDEADKL
LSQDFVVLIEDIISFLHKNRQILLYSATFPVTVQKFMAKHLKKPYEINLMEELTLKGITQ
YYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKMMQE
YRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPRNSETYLHRIGRSGRFGHL
GLAINLITAEDRFNLKAIEDQLVTDIKPIPGSIDKSLYVADFHTTNDEAEEQETAEEP
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atggctactgcgaagatggagaacgttggcgctgttgtaatggggcttggtaagcagaac
ggacagctcagaggactgagctctcagtcaggaaccgccattcagagcaacccgtttgca
aggggcccgaaacctgctgcagactcacaggaaggacctggaatcaggtttggtgaagac
tggaaaaagagcctgcagcttccacccaaagacaacagagtgaaaacttcagatgtgacg
gccacaaagggaaatgagtttgaagactactgtttaaagagagagttactcatggggatc
tttgaaatgggctgggagaaaccttccccggtccaggaggagagcatccctattgctctc
tcgggtcgtgacatcctggctcgtgccaaaaacggaacagggaagagtggagcgtacctg
atacccatgctggagaggatagatctgaagaaagaatacatccaggccttagtaatggtg
cccactcgtgagcttgcactacaggtcagccagatcagcattcagctcagtaagcatctc
catggactcaaagtcatggccaccaccggcggaacaaacctacgagacgacatcatgcgt
ctggatgaaatcgtccatgttgtcattgctacaccaggcaggatactggacctgatcaag
aagggtgtagcgaaagtggataaagttcagatcatggtcatggatgaggctgataagctg
ctctcccaggactttgtggtgctcattgaggacatcatcagcttcctgcacaagaacagg
cagatcttgttgtattctgccacctttcctgtcactgtgcaaaaatttatggcgaaacat
ctaaaaaagccttacgagataaatctgatggaagagttgactctgaagggcatcacgcag
tactacgcctacgttactgagaggcagaaggtgcactgccttaacacgctgttctccagg
ctgcaaatcaatcagtccatcatcttctgtaactcgacacagagagtggagctgttggct
aagaaaattactcagcttggctactcctgtttctacatccatgccaagatgatgcaggag
tacagaaaccgtgttttccatgacttcagaaatgggttgtgcagaaatctggtctgtaca
gatttgttcacgagaggcatcgacatccaggcagtgaacgtggtcatcaatttcgacttt
cccaggaactcagagacgtatctgcatcgcatcgggcgctcagggaggtttggtcacctg
ggtctggccattaacttgatcacagcggaggatcgcttcaacctgaaagccattgaggac
cagctggtgactgatatcaagcccatccccggcagcatcgataaaagtctgtatgtggcc
gattttcacacaaccaatgatgaggcagaggagcaggaaacggctgaagaaccttaa
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