Tachysurus fulvidraco (yellow catfish): 113641426
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Entry
113641426 CDS
T08119
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03013
Nucleocytoplasmic transport
tfd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
113641426 (srrm1)
03015 mRNA surveillance pathway
113641426 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113641426 (srrm1)
03041 Spliceosome [BR:
tfd03041
]
113641426 (srrm1)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113641426 (srrm1)
Spliceosome [BR:
tfd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
113641426 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
113641426
NCBI-ProteinID:
XP_047677310
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Position
12:25045640..25058041
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AA seq
793 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVVEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKLRQESLAVLKKVDEDKKERESKEKAQSRSPKRLFVSRRKSRSPAKRER
KRSHSRSPRRKPSPPALPLPSPPSNKPEPQPEPDQSESSKPEPLVQEASSTSDLTNETKL
DPVAEVPKDASPEKPTKVEDKPKPRDRERDREKDGRRDRPRHRTRSRSPRPRRRHRSRSR
SYSPRRKPSPRRRMSPRRRSPPRRPPPPRHRRSRSPARRRRSRSRSSSGSSSSRSPHKKP
TKRSSITPPRKLPRRTDTSSSPSRRRRSPSGSARRPAGRNESPSPAPKPRRSDLSESEED
KLGKGAAVDSVQQRRQYRRQNQQSSSDTGSSSSSSEDEGQRRMGRGQPARNGDIRRRRSH
SPVSPRRRHRDVSPRKRRSPSPRRHRSPSPRRRRSPSPPPRRRSPSPPPRRYSPPIQRRY
SPSPLPAHKRRPSPLPAPPKRSSPRSSSSPPPRSRRSPPMSSGRQSSPQGRYPAAGSSPQ
RRGQSPSHGRAIRRVSRTPEPRNLQRDSQSPRPMRRQSSRSRSASPDHFPASSAAAPVSL
KRPASASPSPSPARSASGSPPPPAKKASSASPSPSPNKNSDVDGGKKKKKKKEKKHKKEK
KHKKHKKHKKEKGGAAAPSGDGQENVRTEEEHEPSQKKESESEVEDSLDDLEKHLREKAL
RSMRKAQLSPPQS
NT seq
2382 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggtttttccgcggcaccagtgcggagcaggacaaccgcttcagtaataaa
cataagaagttgctgaagcagctgaagtttgcagaatgtctggagaaaaaggtggacatg
acgaaagtaaacctggaggtcatcaagccatggatcacgcagcgcgtcaccgagatcctc
ggcttcgaggacgacgtcgtggtcgagttcgtcttcaaccagctggaggagaagaaccca
gacggtaagatgatgcagattaacctgaccggtttcctgaacgggaagaacgcacgcgag
ttcatgaaggacctctggcccttgctgctgagcgcgcaggagaacatcgccgggatcccg
tccgcctttctcgagcagaagaaagaggagatcaagctcagacaggagtcactggcggta
ttgaaaaaggtagatgaagataagaaagagagagagagcaaagagaaagctcagtcccgg
agtcccaaacgtctttttgtctccaggagaaaatcccgttcacctgcgaagcgcgaacgg
aaacgcagccactctcgttcacctcgacgcaaacccagcccaccggctcttcccctgccc
agtccacccagcaacaaacccgagcctcaaccagagcccgaccaatcagagagctccaaa
ccagaacctcttgtccaggaggcttcctccaccagtgatctgacgaacgaaacaaagctg
gatccggtggctgaagttcctaaggacgcgtctccggagaaacctacaaaggtggaggac
aaaccgaaaccgagagatagagagagagaccgggagaaagacggacgcagagatcgtcca
cgccatcgcacacggtctcgctcgcctcgcccacgtcgtcgccaccggtcaagatctaga
tcatactcacctcggcgtaaaccgagcccgaggagacgcatgtcccccagacgcaggagc
cccccaaggagaccacctcctcccagacacagacgcagccgctctcctgcccgcaggcgg
cgttcacgttctcgctcgtcttcaggcagctcttcttcacgctcacctcacaagaagcca
actaaacgcagctccatcacaccacccaggaagctgccacgccgcactgatacatcatcc
agccccagcaggaggcgccgcagcccctcaggttcggctcggcgacccgctgggagaaac
gagtcgccttctcctgcccctaaacccagacgatcagacctctccgaatccgaggaggat
aagttggggaagggggctgcggtcgattcagtccaacagcgacggcagtatcgtagacag
aatcagcagtcgtcttcagataccggatcatcctcctcgtcctccgaggatgaagggcag
aggagaatgggcagagggcaaccagcaaggaacggggacatcaggaggaggcggagtcac
tcacccgtgtcacctaggagacggcacagagacgtatcaccaagaaagagacgatctcca
tctcctcgtcgtcaccgctcaccttcacccagacggcgtaggtcaccatcgcctccaccc
agacgcaggtcgccctcaccccctcctcgccgctattcaccgcccatccagcggcgctac
agcccatcgcctcttcctgctcacaagagacgcccttctcctttacctgctcctccgaag
cgcagcagtccacgctcgtcttcctctccccctccacgctcgcgccgtagcccgccgatg
tcctcaggacgccagagcagcccgcaaggcaggtacccggctgcagggtcatcccctcag
cgaaggggccagtctccgtcccacggcagagccattcgcagggtgtctcgtacacctgag
ccacggaacttgcagagagattctcagagcccacggccaatgagaagacaatcatctcgt
tcgcgctctgcctctcctgatcatttcccagcatcctcggcggcagcccccgtgtctctc
aagaggccggcgtctgcgtccccctctccgtcccccgctcgctcggccagcggctctccc
ccacctccggctaagaaggccagcagtgcctctccaagcccctcccccaacaagaactct
gacgtagacggcggcaagaaaaagaagaaaaagaaggagaagaaacacaagaaggagaag
aaacacaagaagcacaagaagcacaagaaggagaaaggcggcgccgctgctccgtcaggg
gacggccaggaaaacgtccggacggaggaagagcacgaacccagtcagaaaaaggaatca
gagagtgaagtagaggacagtctggatgatttggagaagcacctgagggaaaaagctcta
cgttccatgaggaaagcccagctgtctcctccccagtcctga
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