Tachysurus fulvidraco (yellow catfish): 113641454
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Entry
113641454 CDS
T08119
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1 isoform X3
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tfd
Tachysurus fulvidraco (yellow catfish)
Pathway
tfd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tfd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
113641454 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tfd03019
]
113641454 (patl1)
Messenger RNA biogenesis [BR:
tfd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
113641454 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
113641454 (patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
113641454
NCBI-ProteinID:
XP_026999940
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All DBs
Position
7:complement(30147791..30158073)
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AA seq
769 aa
AA seq
DB search
MFRFQSLDDDCTLEEEEGPVEEEDEIDQFNDDTFGAGAIDDDWQEEHARLAELDERDGLL
GGGEVSSVIPPPPESIPLPSSLPPPPIPSLSPLGSEDKAGGDLAESLAHLILDSDPAIAE
VGAAEPDRSRLPPSAPSNQTLPPGFRGMSPQMLSYQQQQQLLHRGGVQMNSHSIWENNMG
FGPVSVPHGIVTHIEDSPLLSMMKELPKLTPPISREEGRDLSERVPPPRASSPVIGSPPV
RAIPIGTPPKQPMSHAMNQQLHHPTAVHVRAPIPHRFPPPFPERLSPNTLLNITNSPLCR
PPFPAGVAPVLSQIQRAQLLNSQVGPFPRGAGPAPSMLPGAAGGFRPYFGQPSPRVGPHG
PHPNHVPLPSHAPIRHNTTHLHPQHRRMLTQRMQSRGGGVRGGGCDRRIRDPYSNLMTQK
EKDWVARIQMMQLQSTDPYLDDYYYQNYYEKMEKRQERDRDSSRKEHTTKLITPQVAKIE
HTYRPVQFAGSLGKLTVSSVNNPRKMIDAVVTSRSDDEEKREKQVWNKRRQILYTVEKMY
SLLLEVQDFEKKFIQTPEEEREALLEQHKTNTLQLYNSLREKEWDDRVSDQQCLLIMSVR
KGKRLIARLLPFLSSSQAAAVIMGVARNLPALAKKDKQDQVLCWLVEPTAGVIQSMSSST
LTDLLQELQGGDGHFPRVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSV
TRELLQVPSSSLSPPLFTPPNLLSLFSRYVDRQRLEQLQEKLQITALSR
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgttccgttttcagtcccttgatgatgactgcaccctggaggaggaggagggtccggta
gaggaagaagatgaaattgaccagtttaacgatgacacatttggtgctggagcgattgat
gatgactggcaggaagagcatgcacgactggcggagctggatgagagagatgggctgctg
gggggtggtgaagtgtcctccgttatccctcctccacccgagagcatccctcttccctca
tctctcccccctccccctattccctccctctctccgcttggctctgaggacaaggctggt
ggtgacctggccgagtctctggctcacctcatacttgactcagatcctgccatcgcagag
gtgggtgcggccgaaccggacagatcccgcctcccaccatcagcgccgtccaatcagacg
ctgcctccaggtttcagaggcatgtcaccccagatgctcagctaccagcaacaacagcag
ctcctgcacagagggggggtgcagatgaactcacatagtatttgggagaacaacatgggc
tttggtcctgttagtgttccacatggaattgttacacacattgaggactctccgctgttg
tccatgatgaaagagcttccaaaactgactcctccaatcagcagggaggaggggcgggat
ttgtctgaaagggtcccgccccctagggcatcctcacctgtaattggaagtccacctgta
agagcgatacccattggaactccacccaaacagcccatgagccacgctatgaatcagcag
ctccaccatcccactgcggtgcacgtaagagctccaataccacaccgtttccctcctcct
ttccccgagcgcctctcacccaacaccctgctgaacatcaccaactctccgctttgtcgt
cccccgttcccagctggagtcgctcctgtcctgtctcagatacagcgagctcagctgctc
aactctcaggtgggtccgttcccccgaggtgctggtccagctccttccatgctgcccggt
gctgctggaggctttaggccttattttgggcagccgtctcccagagttggccctcatggg
cctcatcctaaccacgttcctttgcctagccacgcccctattcgccacaacacaacccac
ctccaccctcagcaccgcaggatgcttacacagaggatgcagagcagaggtggtggtgtg
agaggtggtggttgtgaccggaggatcagggacccttacagtaatctgatgactcagaag
gagaaggactgggtggcccgtattcagatgatgcagctgcagagcactgacccttatctg
gacgactattattaccagaattattatgaaaagatggagaagcgtcaggagcgagaccga
gacagcagcaggaaggagcacactactaaactcatcactcctcaggtggccaagatcgag
cacacctatcgcccagtgcagtttgctggttctctgggtaaactcaccgtgtccagtgtg
aacaatcccaggaagatgatcgatgccgttgtgacgagtcgctctgatgatgaggagaag
agagaaaaacaggtgtggaataagagacgacagattctctacactgtggagaagatgtac
agtctgctgctggaggttcaggactttgagaagaaatttatccagactccagaggaggag
agagaagctctgctggagcaacacaaaaccaacacactgcagctctacaactctctgaga
gagaaagagtgggacgaccgagtgagcgatcagcagtgtcttctgatcatgtccgtgcgt
aaagggaaacgcctcatcgctaggctcctcccattcctgtcttcatcccaagctgctgcc
gtcatcatgggagtcgctcgcaatcttcctgctctggccaagaaggacaagcaggatcag
gtgctgtgctggttggtggagccgactgcaggtgtgattcagtccatgtcgagctccacc
ctcactgatctactgcaggagctgcaggggggtgacggtcacttcccccgtgtgctgcag
aataaatttggtgtgacgctgctgtacctgatcctgagtgagggagagcgaatgcagagc
tctgatcctaactgtcagctcatggatgataatcgctggacggagttggtgttctcagtg
acgagggaactgttacaggttccttcctcctctctctctcctcctctcttcacccctccc
aacctcctctctctcttctctcgctatgtcgaccggcagaggctcgagcaactgcaggag
aaactacagatcactgccttgtccaggtag
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